Source code for convert_Genesis2Sbml

# convert_Genesis2Sbml.py ---
#
# Filename: convert_Genesis2Sbml.py
# Description:
# Author:Harsha Rani
# Maintainer:
# Created: Mon Jan 19 09:16:58 2015 (+0530)
# Version:
# Last-Updated: Mon Nov 7 15:155:38 2012 (+0530)
#           By: Harsha Rani
#     Update #:
# URL:
# Keywords:
# Compatibility:
#
#

# Commentary:
#
# The script demonstates to convert Chemical (Genesis) file to SBML file using moose
#
#

# Change log:
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#
#
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation; either version 3, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; see the file COPYING.  If not, write to
# the Free Software Foundation, Inc., 51 Franklin Street, Fifth
# Floor, Boston, MA 02110-1301, USA.
#
#

# Code:

import moose

[docs]def main():
    """This example illustrates loading a kinetic model defined in Genesis format
    into Moose using loadModel function and using writeSBML function
    one can save the model into SBML format. \n
    **libsbml should be installed.**
        """
    #This command loads the file into the path '/Kholodenko'
    moose.loadModel('../genesis/Kholodenko.g','/Kholodenko')

    #Writes model to xml file
    written = moose.mooseWriteSBML('/Kholodenko','../genesis/Kholodenko_tosbml.xml')
    print(written)

if __name__ == '__main__':
    main()