ChemCompt Member List

This is the complete list of members for ChemCompt, including all inherited members.

boundaries_	ChemCompt	private
buildDefaultMesh(const Eref &e, double volume, unsigned int numEntries)	ChemCompt
buildJunction(ChemCompt *other, vector< VoxelJunction > &ret)	ChemCompt
ChemCompt()	ChemCompt
clearExtendedMeshEntryVolume()=0	ChemCompt	pure virtual
distance(double x, double y, double z)	ChemCompt	static
entry_	ChemCompt	private
extendedMeshEntryVolume(unsigned int fid) const =0	ChemCompt	pure virtual
extendStencil(const ChemCompt *other, const vector< VoxelJunction > &vj)=0	ChemCompt	pure virtual
flipRet(vector< VoxelJunction > &ret) const	ChemCompt
getChildConcs(const Eref &e, vector< double > &childConcs) const	ChemCompt
getCoordinates(unsigned int fid) const =0	ChemCompt	pure virtual
getDiffusionArea(unsigned int fid) const =0	ChemCompt	pure virtual
getDiffusionScaling(unsigned int fid) const =0	ChemCompt	pure virtual
getDimensions() const	ChemCompt
getEntireVolume(const Eref &e) const	ChemCompt
getIsMembraneBound() const	ChemCompt
getMeshDimensions(unsigned int fid) const =0	ChemCompt	pure virtual
getMeshEntryVolume(unsigned int fid) const =0	ChemCompt	pure virtual
getMeshType(unsigned int fid) const =0	ChemCompt	pure virtual
getMethod() const	ChemCompt
getNeighbors(unsigned int fid) const =0	ChemCompt	pure virtual
getNumEntries() const	ChemCompt
getOneVoxelVolume(const Eref &e, unsigned int voxel) const	ChemCompt
getStencilIndex(unsigned int row) const	ChemCompt
getStencilRate(unsigned int row) const	ChemCompt
getStencilRow(unsigned int meshIndex, const double **entry, const unsigned int **colIndex) const =0	ChemCompt	pure virtual
getVoxelMidpoint() const	ChemCompt
getVoxelVolume() const	ChemCompt
handleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads)	ChemCompt
indexToSpace(unsigned int index, double &x, double &y, double &z) const =0	ChemCompt	pure virtual
initCinfo()	ChemCompt	static
innerBuildDefaultMesh(const Eref &e, double volume, unsigned int numEntries)=0	ChemCompt	pure virtual
innerGetDimensions() const =0	ChemCompt	pure virtual
innerGetNumEntries() const =0	ChemCompt	pure virtual
innerGetStencilRate(unsigned int row) const =0	ChemCompt	pure virtual
innerHandleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads)=0	ChemCompt	pure virtual
innerResetStencil()=0	ChemCompt	pure virtual
innerSetNumEntries(unsigned int n)=0	ChemCompt	pure virtual
isMembraneBound_	ChemCompt	private
lookupEntry(unsigned int index)	ChemCompt
matchMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const =0	ChemCompt	pure virtual
method_	ChemCompt	private
nearest(double x, double y, double z, unsigned int &index) const =0	ChemCompt	pure virtual
resetStencil()	ChemCompt
setChildConcs(const Eref &e, const vector< double > &childConcs, unsigned int start) const	ChemCompt
setEntireVolume(const Eref &e, double volume)	ChemCompt
setIsMembraneBound(bool v)	ChemCompt
setMeshEntryVolume(unsigned int fid, double volume)	ChemCompt	virtual
setMethod(string method)	ChemCompt
setNumEntries(unsigned int num)	ChemCompt
setOneVoxelVolume(const Eref &e, unsigned int voxel, double volume)	ChemCompt
setVolumeNotRates(double volume)	ChemCompt
vGetEntireVolume() const =0	ChemCompt	pure virtual
vGetVoxelMidpoint() const =0	ChemCompt	pure virtual
vGetVoxelVolume() const =0	ChemCompt	pure virtual
voxelVolOut()	ChemCompt	static
vSetVolumeNotRates(double volume)=0	ChemCompt	pure virtual
~ChemCompt()	ChemCompt	virtual