CylMesh Member List

This is the complete list of members for CylMesh, including all inherited members.

addRow(unsigned int index, const vector< double > &entry, const vector< unsigned int > &colIndex)	MeshCompt
buildDefaultMesh(const Eref &e, double volume, unsigned int numEntries)	ChemCompt
buildJunction(ChemCompt *other, vector< VoxelJunction > &ret)	ChemCompt
buildStencil()	CylMesh
ChemCompt()	ChemCompt
clearExtendedMeshEntryVolume()	MeshCompt	virtual
CylMesh()	CylMesh
diffLength_	CylMesh	private
distance(double x, double y, double z)	ChemCompt	static
extendedMeshEntryVolume(unsigned int fid) const	CylMesh	virtual
extendStencil(const ChemCompt *other, const vector< VoxelJunction > &vj)	MeshCompt	virtual
flipRet(vector< VoxelJunction > &ret) const	ChemCompt
getChildConcs(const Eref &e, vector< double > &childConcs) const	ChemCompt
getCoordinates(unsigned int fid) const	CylMesh	virtual
getCoords(const Eref &e) const	CylMesh
getDiffLength(const Eref &e) const	CylMesh
getDiffusionArea(unsigned int fid) const	CylMesh	virtual
getDiffusionScaling(unsigned int fid) const	CylMesh	virtual
getDimensions() const	ChemCompt
getEntireVolume(const Eref &e) const	ChemCompt
getIsMembraneBound() const	ChemCompt
getMeshDimensions(unsigned int fid) const	CylMesh	virtual
getMeshEntryVolume(unsigned int fid) const	CylMesh	virtual
getMeshType(unsigned int fid) const	CylMesh	virtual
getMethod() const	ChemCompt
getNeighbors(unsigned int fid) const	MeshCompt	virtual
getNumEntries() const	ChemCompt
getOneVoxelVolume(const Eref &e, unsigned int voxel) const	ChemCompt
getParentVoxel() const	CylMesh	virtual
getR0(const Eref &e) const	CylMesh
getR1(const Eref &e) const	CylMesh
getStencil() const	MeshCompt
getStencilIndex(unsigned int row) const	ChemCompt
getStencilRate(unsigned int row) const	ChemCompt
getStencilRow(unsigned int meshIndex, const double **entry, const unsigned int **colIndex) const	MeshCompt	virtual
getTotLength() const	CylMesh
getVoxelArea() const	CylMesh	virtual
getVoxelLength() const	CylMesh	virtual
getVoxelMidpoint() const	ChemCompt
getVoxelVolume() const	ChemCompt
getX0(const Eref &e) const	CylMesh
getX1(const Eref &e) const	CylMesh
getY0(const Eref &e) const	CylMesh
getY1(const Eref &e) const	CylMesh
getZ0(const Eref &e) const	CylMesh
getZ1(const Eref &e) const	CylMesh
handleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads)	ChemCompt
indexToSpace(unsigned int index, double &x, double &y, double &z) const	CylMesh	virtual
initCinfo()	CylMesh	static
innerBuildDefaultMesh(const Eref &e, double volume, unsigned int numEntries)	CylMesh	virtual
innerGetDimensions() const	CylMesh	virtual
innerGetNumEntries() const	CylMesh	virtual
innerGetStencilRate(unsigned int row) const	MeshCompt	virtual
innerHandleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads)	CylMesh	virtual
innerHandleRequestMeshStats(const Eref &e, const SrcFinfo2< unsigned int, vector< double > > *meshStatsFinfo)	CylMesh
innerResetStencil()	MeshCompt	virtual
innerSetCoords(const Eref &e, const vector< double > &v)	CylMesh
innerSetNumEntries(unsigned int n)	CylMesh	virtual
isToroid_	CylMesh	private
lenSlope_	CylMesh	private
lookupEntry(unsigned int index)	ChemCompt
matchCubeMeshEntries(const CubeMesh *other, vector< VoxelJunction > &ret) const	CylMesh
matchCylMeshEntries(const CylMesh *other, vector< VoxelJunction > &ret) const	CylMesh
matchMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const	CylMesh	virtual
matchNeuroMeshEntries(const NeuroMesh *other, vector< VoxelJunction > &ret) const	CylMesh
MeshCompt()	MeshCompt
nearest(double x, double y, double z, unsigned int &index) const	CylMesh	virtual
nearest(double x, double y, double z, double &linePos, double &r) const	CylMesh
numEntries_	CylMesh	private
r0_	CylMesh	private
r1_	CylMesh	private
resetStencil()	ChemCompt
rSlope_	CylMesh	private
selectGridVolume(double h) const	CylMesh
setChildConcs(const Eref &e, const vector< double > &childConcs, unsigned int start) const	ChemCompt
setCoords(const Eref &e, vector< double > v)	CylMesh
setDiffLength(const Eref &e, double v)	CylMesh
setEntireVolume(const Eref &e, double volume)	ChemCompt
setIsMembraneBound(bool v)	ChemCompt
setMeshEntryVolume(unsigned int fid, double volume)	ChemCompt	virtual
setMethod(string method)	ChemCompt
setNumEntries(unsigned int num)	ChemCompt
setOneVoxelVolume(const Eref &e, unsigned int voxel, double volume)	ChemCompt
setR0(const Eref &e, double v)	CylMesh
setR1(const Eref &e, double v)	CylMesh
setStencilSize(unsigned int numRows, unsigned int numCols)	MeshCompt
setVolumeNotRates(double volume)	ChemCompt
setX0(const Eref &e, double v)	CylMesh
setX1(const Eref &e, double v)	CylMesh
setY0(const Eref &e, double v)	CylMesh
setY1(const Eref &e, double v)	CylMesh
setZ0(const Eref &e, double v)	CylMesh
setZ1(const Eref &e, double v)	CylMesh
surfaceGranularity_	CylMesh	private
totLen_	CylMesh	private
transmitChange(const Eref &e)	CylMesh
updateCoords(const Eref &e, const vector< double > &childConcs)	CylMesh
useCaps_	CylMesh	private
vGetEntireVolume() const	CylMesh	virtual
vGetVoxelMidpoint() const	CylMesh	virtual
vGetVoxelVolume() const	CylMesh	virtual
voxelVolOut()	ChemCompt	static
vSetVolumeNotRates(double volume)	CylMesh	virtual
x0_	CylMesh	private
x1_	CylMesh	private
y0_	CylMesh	private
y1_	CylMesh	private
z0_	CylMesh	private
z1_	CylMesh	private
~ChemCompt()	ChemCompt	virtual
~CylMesh()	CylMesh
~MeshCompt()	MeshCompt