GssaVoxelPools Member List

This is the complete list of members for GssaVoxelPools, including all inherited members.

addProxyTransferIndex(unsigned int comptIndex, unsigned int transferIndex)	VoxelPoolsBase
addProxyVoxy(unsigned int comptIndex, Id comptId, unsigned int voxel)	VoxelPoolsBase
advance(const ProcInfo *p)	GssaVoxelPools
advance(const ProcInfo *p, const GssaSystem *g)	GssaVoxelPools
atot_	GssaVoxelPools	private
backwardReacVolumeFactor(unsigned int i, double volume)	VoxelPoolsBase
filterCrossRateTerms(const vector< Id > &offSolverReacs, const vector< pair< Id, Id > > &offSolverReacCompts)	VoxelPoolsBase
forwardReacVolumeFactor(unsigned int i, double volume)	VoxelPoolsBase
getDiffConst(unsigned int) const	VoxelPoolsBase
getN(unsigned int) const	VoxelPoolsBase
getNinit(unsigned int) const	VoxelPoolsBase
getReacVelocity(unsigned int r, const double *s) const	GssaVoxelPools
getVolume() const	VoxelPoolsBase
getXreacScaleProducts(unsigned int i) const	VoxelPoolsBase
getXreacScaleSubstrates(unsigned int i) const	VoxelPoolsBase
GssaVoxelPools()	GssaVoxelPools
hasXfer(unsigned int comptIndex) const	VoxelPoolsBase
isVoxelJunctionPresent(Id i1, Id i2) const	VoxelPoolsBase
numFire() const	GssaVoxelPools
numFire_	GssaVoxelPools	private
pickReac()	GssaVoxelPools
print() const	VoxelPoolsBase
rates_	VoxelPoolsBase	protected
recalcTime(const GssaSystem *g, double currTime)	GssaVoxelPools
refreshAtot(const GssaSystem *g)	GssaVoxelPools
reinit(const GssaSystem *g)	GssaVoxelPools
VoxelPoolsBase::reinit()	VoxelPoolsBase
resetXreacScale(unsigned int size)	VoxelPoolsBase
resizeArrays(unsigned int totNumPools)	VoxelPoolsBase
rng_	GssaVoxelPools	private
S() const	VoxelPoolsBase
scaleVolsBufsRates(double ratio, const Stoich *stoichPtr)	VoxelPoolsBase
setDiffConst(unsigned int, double v)	VoxelPoolsBase
setN(unsigned int i, double v)	VoxelPoolsBase
setNinit(unsigned int, double v)	VoxelPoolsBase
setNumReac(unsigned int n)	GssaVoxelPools
setStoich(const Stoich *stoichPtr)	GssaVoxelPools
setVolume(double vol)	VoxelPoolsBase
setVolumeAndDependencies(double vol)	GssaVoxelPools	virtual
Sinit() const	VoxelPoolsBase
size() const	VoxelPoolsBase
stoichPtr_	VoxelPoolsBase	protected
Svec()	VoxelPoolsBase
t_	GssaVoxelPools	private
updateAllRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates)	GssaVoxelPools	virtual
updateDependentMathExpn(const GssaSystem *g, unsigned int rindex, double time)	GssaVoxelPools
updateDependentRates(const vector< unsigned int > &deps, const Stoich *stoich)	GssaVoxelPools
updateRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates, unsigned int index)	GssaVoxelPools	virtual
updateReacVelocities(const GssaSystem *g, const double *s, vector< double > &v) const	GssaVoxelPools
v_	GssaVoxelPools	private
varS()	VoxelPoolsBase
varSinit()	VoxelPoolsBase
VoxelPoolsBase()	VoxelPoolsBase
xferIn(XferInfo &xf, unsigned int voxelIndex, const GssaSystem *g)	GssaVoxelPools
VoxelPoolsBase::xferIn(const vector< unsigned int > &poolIndex, const vector< double > &values, const vector< double > &lastValues, unsigned int voxelIndex)	VoxelPoolsBase
xferInOnlyProxies(const vector< unsigned int > &poolIndex, const vector< double > &values, unsigned int numProxyPools, unsigned int voxelIndex)	VoxelPoolsBase
xferOut(unsigned int voxelIndex, vector< double > &values, const vector< unsigned int > &poolIndex)	VoxelPoolsBase
~GssaVoxelPools()	GssaVoxelPools	virtual
~VoxelPoolsBase()	VoxelPoolsBase	virtual