NeuroMesh Member List

This is the complete list of members for NeuroMesh, including all inherited members.

addRow(unsigned int index, const vector< double > &entry, const vector< unsigned int > &colIndex)	MeshCompt
area_	NeuroMesh	private
buildDefaultMesh(const Eref &e, double volume, unsigned int numEntries)	ChemCompt
buildJunction(ChemCompt *other, vector< VoxelJunction > &ret)	ChemCompt
buildNodeTree(const map< Id, unsigned int > &comptMap)	NeuroMesh
buildStencil()	NeuroMesh
ChemCompt()	ChemCompt
clearExtendedMeshEntryVolume()	MeshCompt	virtual
diffLength_	NeuroMesh	private
distance(double x, double y, double z)	ChemCompt	static
extendedMeshEntryVolume(unsigned int fid) const	NeuroMesh	virtual
extendStencil(const ChemCompt *other, const vector< VoxelJunction > &vj)	MeshCompt	virtual
filterSpines(Id compt)	NeuroMesh
flipRet(vector< VoxelJunction > &ret) const	ChemCompt
geometryPolicy_	NeuroMesh	private
getAdx(unsigned int curr, unsigned int &parentFid) const	NeuroMesh
getChildConcs(const Eref &e, vector< double > &childConcs) const	ChemCompt
getCoordinates(unsigned int fid) const	NeuroMesh	virtual
getDendVoxelsOnCompartment(ObjId compt) const	NeuroMesh
getDiffLength() const	NeuroMesh
getDiffusionArea(unsigned int fid) const	NeuroMesh	virtual
getDiffusionScaling(unsigned int fid) const	NeuroMesh	virtual
getDimensions() const	ChemCompt
getElecComptList() const	NeuroMesh
getElecComptMap() const	NeuroMesh
getEndVoxelInCompt() const	NeuroMesh
getEntireVolume(const Eref &e) const	ChemCompt
getGeometryPolicy() const	NeuroMesh
getIsMembraneBound() const	ChemCompt
getMeshDimensions(unsigned int fid) const	NeuroMesh	virtual
getMeshEntryVolume(unsigned int fid) const	NeuroMesh	virtual
getMeshType(unsigned int fid) const	NeuroMesh	virtual
getMethod() const	ChemCompt
getNeighbors(unsigned int fid) const	MeshCompt	virtual
getNodes() const	NeuroMesh
getNumDiffCompts() const	NeuroMesh
getNumEntries() const	ChemCompt
getNumSegments() const	NeuroMesh
getOneVoxelVolume(const Eref &e, unsigned int voxel) const	ChemCompt
getParentVoxel() const	NeuroMesh	virtual
getSeparateSpines() const	NeuroMesh
getSpineVoxelOnDendVoxel() const	NeuroMesh
getSpineVoxelsOnCompartment(ObjId compt) const	NeuroMesh
getStartVoxelInCompt() const	NeuroMesh
getStencil() const	MeshCompt
getStencilIndex(unsigned int row) const	ChemCompt
getStencilRate(unsigned int row) const	ChemCompt
getStencilRow(unsigned int meshIndex, const double **entry, const unsigned int **colIndex) const	MeshCompt	virtual
getSubTree(const Eref &e) const	NeuroMesh
getSubTreePath(const Eref &e) const	NeuroMesh
getVoxelArea() const	NeuroMesh	virtual
getVoxelLength() const	NeuroMesh	virtual
getVoxelMidpoint() const	ChemCompt
getVoxelVolume() const	ChemCompt
handleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads)	ChemCompt
head_	NeuroMesh	private
indexToSpace(unsigned int index, double &x, double &y, double &z) const	NeuroMesh	virtual
initCinfo()	NeuroMesh	static
innerBuildDefaultMesh(const Eref &e, double size, unsigned int numEntries)	NeuroMesh	virtual
innerGetDimensions() const	NeuroMesh	virtual
innerGetNumEntries() const	NeuroMesh	virtual
innerGetStencilRate(unsigned int row) const	MeshCompt	virtual
innerHandleNodeInfo(const Eref &e, unsigned int numNodes, unsigned int numThreads)	NeuroMesh	virtual
innerHandleRequestMeshStats(const Eref &e, const SrcFinfo2< unsigned int, vector< double > > *meshStatsFinfo)	NeuroMesh
innerResetStencil()	MeshCompt	virtual
innerSetNumEntries(unsigned int n)	NeuroMesh	virtual
insertDummyNodes()	NeuroMesh
insertSingleDummy(unsigned int parent, unsigned int self, double x, double y, double z)	NeuroMesh
length_	NeuroMesh	private
lookupEntry(unsigned int index)	ChemCompt
matchCubeMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const	NeuroMesh
matchMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const	NeuroMesh	virtual
matchNeuroMeshEntries(const ChemCompt *other, vector< VoxelJunction > &ret) const	NeuroMesh
MeshCompt()	MeshCompt
nearest(double x, double y, double z, unsigned int &index) const	NeuroMesh	virtual
NeuroMesh()	NeuroMesh
NeuroMesh(const NeuroMesh &other)	NeuroMesh
nodeIndex_	NeuroMesh	private
nodes_	NeuroMesh	private
operator=(const NeuroMesh &other)	NeuroMesh
parent_	NeuroMesh	private
parentVoxel_	NeuroMesh	private
putSomaAtStart(Id origSoma, unsigned int maxDiaIndex)	NeuroMesh
resetStencil()	ChemCompt
separateSpines_	NeuroMesh	private
setChildConcs(const Eref &e, const vector< double > &childConcs, unsigned int start) const	ChemCompt
setDiffLength(double v)	NeuroMesh
setEntireVolume(const Eref &e, double volume)	ChemCompt
setGeometryPolicy(string v)	NeuroMesh
setIsMembraneBound(bool v)	ChemCompt
setMeshEntryVolume(unsigned int fid, double volume)	ChemCompt	virtual
setMethod(string method)	ChemCompt
setNumEntries(unsigned int num)	ChemCompt
setOneVoxelVolume(const Eref &e, unsigned int voxel, double volume)	ChemCompt
setSeparateSpines(bool v)	NeuroMesh
setStencilSize(unsigned int numRows, unsigned int numCols)	MeshCompt
setSubTree(const Eref &e, vector< ObjId > compartments)	NeuroMesh
setSubTreePath(const Eref &e, string path)	NeuroMesh
setVolumeNotRates(double volume)	ChemCompt
shaft_	NeuroMesh	private
subTreePath_	NeuroMesh	private
surfaceGranularity_	NeuroMesh	private
transmitSpineInfo(const Eref &e)	NeuroMesh
updateCoords()	NeuroMesh
updateShaftParents()	NeuroMesh
vGetEntireVolume() const	NeuroMesh	virtual
vGetVoxelMidpoint() const	NeuroMesh	virtual
vGetVoxelVolume() const	NeuroMesh	virtual
voxelVolOut()	ChemCompt	static
vs_	NeuroMesh	private
vSetVolumeNotRates(double volume)	NeuroMesh	virtual
~ChemCompt()	ChemCompt	virtual
~MeshCompt()	MeshCompt
~NeuroMesh()	NeuroMesh