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NeuroNode Member List

This is the complete list of members for NeuroNode, including all inherited members.

addChild(unsigned int child)NeuroNode
buildSpinyTree(vector< ObjId > &elist, vector< NeuroNode > &nodes, vector< Id > &shaftId, vector< Id > &headId, vector< unsigned int > &spineParent)NeuroNodestatic
buildTree(vector< NeuroNode > &nodes, vector< ObjId > elist)NeuroNodestatic
calculateLength(const CylBase &parent)NeuroNode
children() const NeuroNode
children_NeuroNodeprivate
clearChildren()NeuroNode
CylBase(double x, double y, double z, double dia, double length, unsigned int numDivs)CylBase
CylBase()CylBase
elecCompt() const NeuroNode
elecCompt_NeuroNodeprivate
filterSpines(vector< NeuroNode > &nodes, vector< Id > &shaftId, vector< Id > &headId, vector< unsigned int > &parent)NeuroNodestatic
findConnectedCompartments(const map< Id, unsigned int > &nodeMap, const vector< NeuroNode > &nodes)NeuroNode
findStartNode(const vector< NeuroNode > &nodes)NeuroNodestatic
getCoordinates(const CylBase &parent, unsigned int entry) const CylBase
getDia() const CylBase
getDiffusionArea(const CylBase &parent, unsigned int index) const CylBase
getIsCylinder() const CylBase
getLength() const CylBase
getMiddleArea(const CylBase &parent, unsigned int index) const CylBase
getNumDivs() const CylBase
getVoxelLength() const CylBase
getX() const CylBase
getY() const CylBase
getZ() const CylBase
innerTraverse(vector< NeuroNode > &tree, const vector< NeuroNode > &nodes, vector< unsigned int > &seen) const NeuroNode
isDummyNode() const NeuroNode
isSphere() const NeuroNode
isSphere_NeuroNodeprivate
isStartNode() const NeuroNode
matchCubeMeshEntries(const ChemCompt *other, const CylBase &parent, unsigned int startIndex, double granularity, vector< VoxelJunction > &ret, bool useCylinderCurve, bool useCylinderCap) const CylBase
nearest(double x, double y, double z, const CylBase &parent, double &linePos, double &r) const CylBase
nearest(double x, double y, double z, const CylBase &parent, unsigned int &index) const CylBase
NeuroNode(const CylBase &cb, unsigned int parent, const vector< unsigned int > &children, unsigned int startFid_, Id elecCompt, bool isSphere)NeuroNode
NeuroNode(Id elecCompt)NeuroNode
NeuroNode()NeuroNode
parent() const NeuroNode
parent_NeuroNodeprivate
removeDisconnectedNodes(vector< NeuroNode > &nodes)NeuroNodestatic
selectGridSize(double h, double dia1, double granularity) const CylBase
setDia(double v)CylBase
setIsCylinder(bool v)CylBase
setLength(double v)CylBase
setNumDivs(unsigned int v)CylBase
setParent(unsigned int parent)NeuroNode
setParentAndChildren(unsigned int index, int dendParent, vector< NeuroNode > &nodes, const unordered_map< Id, unsigned int > &dendMap)NeuroNode
setStartFid(unsigned int f)NeuroNode
setX(double v)CylBase
setY(double v)CylBase
setZ(double v)CylBase
startFid() const NeuroNode
startFid_NeuroNodeprivate
traverse(vector< NeuroNode > &nodes, unsigned int start)NeuroNodestatic
volume(const CylBase &parent) const CylBase
voxelVolume(const CylBase &parent, unsigned int fid) const CylBase