addmsg(const vector< string > &args) | ReadKkit | |
assignEnzCompartments() | ReadKkit | |
assignMMenzCompartments() | ReadKkit | |
assignPoolCompartments() | ReadKkit | |
assignReacCompartments() | ReadKkit | |
baseId_ | ReadKkit | private |
basePath_ | ReadKkit | private |
buildChan(const vector< string > &args) | ReadKkit | |
buildCompartment(const vector< string > &args) | ReadKkit | |
buildEnz(const vector< string > &args) | ReadKkit | |
buildGeometry(const vector< string > &args) | ReadKkit | |
buildGraph(const vector< string > &args) | ReadKkit | |
buildGroup(const vector< string > &args) | ReadKkit | |
buildInfo(Id parent, map< string, int > &m, const vector< string > &args) | ReadKkit | |
buildPlot(const vector< string > &args) | ReadKkit | |
buildPool(const vector< string > &args) | ReadKkit | |
buildReac(const vector< string > &args) | ReadKkit | |
buildStim(const vector< string > &args) | ReadKkit | |
buildSumTotal(const string &src, const string &dest) | ReadKkit | |
buildTable(const vector< string > &args) | ReadKkit | |
buildText(const vector< string > &args) | ReadKkit | |
call(const vector< string > &args) | ReadKkit | |
chanIds_ | ReadKkit | private |
chanMap_ | ReadKkit | private |
cleanPath(const string &path) const | ReadKkit | |
COMMENT enum value | ReadKkit | |
compartments_ | ReadKkit | private |
controldt_ | ReadKkit | private |
convertEnzRatesToConcUnits() | ReadKkit | |
convertMMenzRatesToConcUnits() | ReadKkit | |
convertParametersToConcUnits() | ReadKkit | |
convertPoolAmountToConcUnits() | ReadKkit | |
convertReacRatesToConcUnits() | ReadKkit | |
DATA enum value | ReadKkit | |
defaultVol_ | ReadKkit | private |
dumpPlots(const string &filename) | ReadKkit | |
enzCplxMols_ | ReadKkit | private |
enzIds_ | ReadKkit | private |
enzMap_ | ReadKkit | private |
EPSILON | ReadKkit | privatestatic |
fastdt_ | ReadKkit | private |
findSumTotSrc(const string &src) | ReadKkit | |
getBasePath() const | ReadKkit | |
getDefaultVol() const | ReadKkit | |
getMaxTime() const | ReadKkit | |
getMoveOntoCompartment() const | ReadKkit | |
getPlotDt() const | ReadKkit | |
getVersion() const | ReadKkit | |
groupMap_ | ReadKkit | private |
INIT enum value | ReadKkit | |
initdumpVersion_ | ReadKkit | private |
innerAddMsg(const string &src, const map< string, Id > &m1, const string &srcMsg, const string &dest, const map< string, Id > &m2, const string &destMsg, bool isBackward=0) | ReadKkit | |
innerRead(ifstream &fin) | ReadKkit | |
lastTab_ | ReadKkit | private |
LINE_CONTINUE enum value | ReadKkit | |
lineNum_ | ReadKkit | private |
loadTab(const vector< string > &args) | ReadKkit | |
maxtime_ | ReadKkit | private |
mmEnzIds_ | ReadKkit | private |
moveOntoCompartment_ | ReadKkit | private |
numCompartments_ | ReadKkit | private |
numEnz_ | ReadKkit | private |
numMMenz_ | ReadKkit | private |
numOthers_ | ReadKkit | private |
numPlot_ | ReadKkit | private |
numPools_ | ReadKkit | private |
numReacs_ | ReadKkit | private |
numStim_ | ReadKkit | private |
objdump(const vector< string > &args) | ReadKkit | |
ParseMode enum name | ReadKkit | |
pathTail(const string &path, string &head) const | ReadKkit | |
plotdt_ | ReadKkit | private |
plotIds_ | ReadKkit | private |
poolFlags_ | ReadKkit | private |
poolIds_ | ReadKkit | private |
poolMap_ | ReadKkit | private |
poolVols_ | ReadKkit | private |
reacIds_ | ReadKkit | private |
reacMap_ | ReadKkit | private |
read(const string &filename, const string &cellname, Id parent, const string &solverClass="Stoich") | ReadKkit | |
readData(const string &line) | ReadKkit | |
readInit(const string &line) | ReadKkit | |
ReadKkit() | ReadKkit | |
run() | ReadKkit | |
separateVols(Id pool, double vol) | ReadKkit | |
setMoveOntoCompartment(bool v) | ReadKkit | |
setupSlaveMsg(const string &src, const string &dest) | ReadKkit | |
shell_ | ReadKkit | private |
simdt_ | ReadKkit | private |
stimIds_ | ReadKkit | private |
stimMap_ | ReadKkit | private |
tabEntries_ | ReadKkit | private |
tabIds_ | ReadKkit | private |
tableMap_ | ReadKkit | private |
textload(const vector< string > &args) | ReadKkit | |
transientTime_ | ReadKkit | private |
undump(const vector< string > &args) | ReadKkit | |
useVariableDt_ | ReadKkit | private |
version_ | ReadKkit | private |
volCategories_ | ReadKkit | private |
vols_ | ReadKkit | private |