MOOSE - Multiscale Object Oriented Simulation Environment
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This is the complete list of members for VoxelPools, including all inherited members.
addProxyTransferIndex(unsigned int comptIndex, unsigned int transferIndex) | VoxelPoolsBase | |
addProxyVoxy(unsigned int comptIndex, Id comptId, unsigned int voxel) | VoxelPoolsBase | |
advance(const ProcInfo *p) | VoxelPools | |
backwardReacVolumeFactor(unsigned int i, double volume) | VoxelPoolsBase | |
filterCrossRateTerms(const vector< Id > &offSolverReacs, const vector< pair< Id, Id > > &offSolverReacCompts) | VoxelPoolsBase | |
forwardReacVolumeFactor(unsigned int i, double volume) | VoxelPoolsBase | |
getDiffConst(unsigned int) const | VoxelPoolsBase | |
getN(unsigned int) const | VoxelPoolsBase | |
getNinit(unsigned int) const | VoxelPoolsBase | |
getStoich() | VoxelPools | |
getVolume() const | VoxelPoolsBase | |
getXreacScaleProducts(unsigned int i) const | VoxelPoolsBase | |
getXreacScaleSubstrates(unsigned int i) const | VoxelPoolsBase | |
hasXfer(unsigned int comptIndex) const | VoxelPoolsBase | |
isVoxelJunctionPresent(Id i1, Id i2) const | VoxelPoolsBase | |
print() const | VoxelPools | |
rates_ | VoxelPoolsBase | protected |
reinit(double dt) | VoxelPools | |
VoxelPoolsBase::reinit() | VoxelPoolsBase | |
resetXreacScale(unsigned int size) | VoxelPoolsBase | |
resizeArrays(unsigned int totNumPools) | VoxelPoolsBase | |
S() const | VoxelPoolsBase | |
scaleVolsBufsRates(double ratio, const Stoich *stoichPtr) | VoxelPoolsBase | |
setDiffConst(unsigned int, double v) | VoxelPoolsBase | |
setInitDt(double dt) | VoxelPools | |
setN(unsigned int i, double v) | VoxelPoolsBase | |
setNinit(unsigned int, double v) | VoxelPoolsBase | |
setStoich(Stoich *stoich, const OdeSystem *ode) | VoxelPools | |
setVolume(double vol) | VoxelPoolsBase | |
setVolumeAndDependencies(double vol) | VoxelPools | virtual |
Sinit() const | VoxelPoolsBase | |
size() const | VoxelPoolsBase | |
stoichPtr_ | VoxelPoolsBase | protected |
Svec() | VoxelPoolsBase | |
updateAllRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates) | VoxelPools | virtual |
updateRates(const double *s, double *yprime) const | VoxelPools | |
updateRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates, unsigned int index) | VoxelPools | virtual |
updateReacVelocities(const double *s, vector< double > &v) const | VoxelPools | |
varS() | VoxelPoolsBase | |
varSinit() | VoxelPoolsBase | |
VoxelPools() | VoxelPools | |
VoxelPoolsBase() | VoxelPoolsBase | |
xferIn(const vector< unsigned int > &poolIndex, const vector< double > &values, const vector< double > &lastValues, unsigned int voxelIndex) | VoxelPoolsBase | |
xferInOnlyProxies(const vector< unsigned int > &poolIndex, const vector< double > &values, unsigned int numProxyPools, unsigned int voxelIndex) | VoxelPoolsBase | |
xferOut(unsigned int voxelIndex, vector< double > &values, const vector< unsigned int > &poolIndex) | VoxelPoolsBase | |
~VoxelPools() | VoxelPools | virtual |
~VoxelPoolsBase() | VoxelPoolsBase | virtual |