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VoxelPools Member List

This is the complete list of members for VoxelPools, including all inherited members.

addProxyTransferIndex(unsigned int comptIndex, unsigned int transferIndex)VoxelPoolsBase
addProxyVoxy(unsigned int comptIndex, Id comptId, unsigned int voxel)VoxelPoolsBase
advance(const ProcInfo *p)VoxelPools
backwardReacVolumeFactor(unsigned int i, double volume)VoxelPoolsBase
filterCrossRateTerms(const vector< Id > &offSolverReacs, const vector< pair< Id, Id > > &offSolverReacCompts)VoxelPoolsBase
forwardReacVolumeFactor(unsigned int i, double volume)VoxelPoolsBase
getDiffConst(unsigned int) const VoxelPoolsBase
getN(unsigned int) const VoxelPoolsBase
getNinit(unsigned int) const VoxelPoolsBase
getStoich()VoxelPools
getVolume() const VoxelPoolsBase
getXreacScaleProducts(unsigned int i) const VoxelPoolsBase
getXreacScaleSubstrates(unsigned int i) const VoxelPoolsBase
hasXfer(unsigned int comptIndex) const VoxelPoolsBase
isVoxelJunctionPresent(Id i1, Id i2) const VoxelPoolsBase
print() const VoxelPools
rates_VoxelPoolsBaseprotected
reinit(double dt)VoxelPools
VoxelPoolsBase::reinit()VoxelPoolsBase
resetXreacScale(unsigned int size)VoxelPoolsBase
resizeArrays(unsigned int totNumPools)VoxelPoolsBase
S() const VoxelPoolsBase
scaleVolsBufsRates(double ratio, const Stoich *stoichPtr)VoxelPoolsBase
setDiffConst(unsigned int, double v)VoxelPoolsBase
setInitDt(double dt)VoxelPools
setN(unsigned int i, double v)VoxelPoolsBase
setNinit(unsigned int, double v)VoxelPoolsBase
setStoich(Stoich *stoich, const OdeSystem *ode)VoxelPools
setVolume(double vol)VoxelPoolsBase
setVolumeAndDependencies(double vol)VoxelPoolsvirtual
Sinit() const VoxelPoolsBase
size() const VoxelPoolsBase
stoichPtr_VoxelPoolsBaseprotected
Svec()VoxelPoolsBase
updateAllRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates)VoxelPoolsvirtual
updateRates(const double *s, double *yprime) const VoxelPools
updateRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates, unsigned int index)VoxelPoolsvirtual
updateReacVelocities(const double *s, vector< double > &v) const VoxelPools
varS()VoxelPoolsBase
varSinit()VoxelPoolsBase
VoxelPools()VoxelPools
VoxelPoolsBase()VoxelPoolsBase
xferIn(const vector< unsigned int > &poolIndex, const vector< double > &values, const vector< double > &lastValues, unsigned int voxelIndex)VoxelPoolsBase
xferInOnlyProxies(const vector< unsigned int > &poolIndex, const vector< double > &values, unsigned int numProxyPools, unsigned int voxelIndex)VoxelPoolsBase
xferOut(unsigned int voxelIndex, vector< double > &values, const vector< unsigned int > &poolIndex)VoxelPoolsBase
~VoxelPools()VoxelPoolsvirtual
~VoxelPoolsBase()VoxelPoolsBasevirtual