MOOSE - Multiscale Object Oriented Simulation Environment
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros
VoxelPoolsBase Member List

This is the complete list of members for VoxelPoolsBase, including all inherited members.

addProxyTransferIndex(unsigned int comptIndex, unsigned int transferIndex)VoxelPoolsBase
addProxyVoxy(unsigned int comptIndex, Id comptId, unsigned int voxel)VoxelPoolsBase
backwardReacVolumeFactor(unsigned int i, double volume)VoxelPoolsBase
filterCrossRateTerms(const vector< Id > &offSolverReacs, const vector< pair< Id, Id > > &offSolverReacCompts)VoxelPoolsBase
forwardReacVolumeFactor(unsigned int i, double volume)VoxelPoolsBase
getDiffConst(unsigned int) const VoxelPoolsBase
getN(unsigned int) const VoxelPoolsBase
getNinit(unsigned int) const VoxelPoolsBase
getVolume() const VoxelPoolsBase
getXreacScaleProducts(unsigned int i) const VoxelPoolsBase
getXreacScaleSubstrates(unsigned int i) const VoxelPoolsBase
hasXfer(unsigned int comptIndex) const VoxelPoolsBase
isVoxelJunctionPresent(Id i1, Id i2) const VoxelPoolsBase
print() const VoxelPoolsBase
proxyComptMap_VoxelPoolsBaseprivate
proxyPoolVoxels_VoxelPoolsBaseprivate
proxyTransferIndex_VoxelPoolsBaseprivate
rates_VoxelPoolsBaseprotected
reinit()VoxelPoolsBase
resetXreacScale(unsigned int size)VoxelPoolsBase
resizeArrays(unsigned int totNumPools)VoxelPoolsBase
S() const VoxelPoolsBase
S_VoxelPoolsBaseprivate
scaleVolsBufsRates(double ratio, const Stoich *stoichPtr)VoxelPoolsBase
setDiffConst(unsigned int, double v)VoxelPoolsBase
setN(unsigned int i, double v)VoxelPoolsBase
setNinit(unsigned int, double v)VoxelPoolsBase
setVolume(double vol)VoxelPoolsBase
setVolumeAndDependencies(double vol)VoxelPoolsBasevirtual
Sinit() const VoxelPoolsBase
Sinit_VoxelPoolsBaseprivate
size() const VoxelPoolsBase
stoichPtr_VoxelPoolsBaseprotected
Svec()VoxelPoolsBase
updateAllRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates)=0VoxelPoolsBasepure virtual
updateRateTerms(const vector< RateTerm * > &rates, unsigned int numCoreRates, unsigned int index)=0VoxelPoolsBasepure virtual
varS()VoxelPoolsBase
varSinit()VoxelPoolsBase
volume_VoxelPoolsBaseprivate
VoxelPoolsBase()VoxelPoolsBase
xferIn(const vector< unsigned int > &poolIndex, const vector< double > &values, const vector< double > &lastValues, unsigned int voxelIndex)VoxelPoolsBase
xferInOnlyProxies(const vector< unsigned int > &poolIndex, const vector< double > &values, unsigned int numProxyPools, unsigned int voxelIndex)VoxelPoolsBase
xferOut(unsigned int voxelIndex, vector< double > &values, const vector< unsigned int > &poolIndex)VoxelPoolsBase
xReacScaleProducts_VoxelPoolsBaseprivate
xReacScaleSubstrates_VoxelPoolsBaseprivate
~VoxelPoolsBase()VoxelPoolsBasevirtual