KinSparseMatrix.h

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/**********************************************************************
** This program is part of 'MOOSE', the
** Messaging Object Oriented Simulation Environment.
**           Copyright (C) 2003-2010 Upinder S. Bhalla. and NCBS
** It is made available under the terms of the
** GNU Lesser General Public License version 2.1
** See the file COPYING.LIB for the full notice.
**********************************************************************/

#ifndef _KIN_SPARSE_MATRIX_H
#define _KIN_SPARSE_MATRIX_H

class KinSparseMatrix: public SparseMatrix< int >
{
    public:
//      KinSparseMatrix();
//      KinSparseMatrix( unsigned int nrows, unsigned int ncolumns );

        double computeRowRate(
            unsigned int row, const vector< double >& v
        ) const;


        void getGillespieDependence(
            unsigned int row, vector< unsigned int >& cols
        ) const;

        void fireReac( unsigned int reacIndex, vector< double >& S,
                        double direction ) const;

        void truncateRow( unsigned int maxColumnIndex );

    private:
        vector< unsigned int > rowTruncated_;
};

#endif  // _KIN_SPARSE_MATRIX_H