ZombieCompartment.h

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/**********************************************************************
** This program is part of 'MOOSE', the
** Messaging Object Oriented Simulation Environment,
** also known as GENESIS 3 base code.
**           copyright (C) 2003-2012 Upinder S. Bhalla. and NCBS
** It is made available under the terms of the
** GNU Lesser General Public License version 2.1
** See the file COPYING.LIB for the full notice.
**********************************************************************/

#ifndef _ZOMBIE_COMPARTMENT_H
#define _ZOMBIE_COMPARTMENT_H

#include "global.h"

#include "header.h"
#include "ElementValueFinfo.h"
#include "../utility/print_function.hpp"
#include "../biophysics/CompartmentBase.h"
#include "../biophysics/Compartment.h"
#include "../randnum/RNG.h"
#include "HinesMatrix.h"
#include "HSolveStruct.h"
#include "HSolvePassive.h"
#include "RateLookup.h"
#include "HSolveActive.h"
#include "HSolve.h"

//class DataHandler;

class ZombieCompartment: public CompartmentBase
{
public:
    ZombieCompartment();
    virtual ~ZombieCompartment();

    /*
     * Value Field access function definitions.
     */

    // Fields handled by solver.
    void vSetVm( const Eref& e , double Vm );
    double vGetVm( const Eref& e  ) const;
    void vSetEm( const Eref& e , double Em );
    double vGetEm( const Eref& e  ) const;
    void vSetCm( const Eref& e , double Cm );
    double vGetCm( const Eref& e  ) const;
    void vSetRm( const Eref& e , double Rm );
    double vGetRm( const Eref& e  ) const;
    void vSetRa( const Eref& e , double Ra );
    double vGetRa( const Eref& e  ) const;
    double vGetIm( const Eref& e  ) const;
    void vSetInject( const Eref& e , double Inject );
    double vGetInject( const Eref& e  ) const;
    void vSetInitVm( const Eref& e , double initVm );
    double vGetInitVm( const Eref& e  ) const;

    // Dest function definitions.
    void dummy( const Eref& e, ProcPtr p );

    void vProcess( const Eref& e, ProcPtr p );

    void vReinit( const Eref& e, ProcPtr p );

    void vInitProc( const Eref& e, ProcPtr p );

    void vInitReinit( const Eref& e, ProcPtr p );

    void vHandleChannel( const Eref& e, double Gk, double Ek);

    void vHandleRaxial( double Ra, double Vm);

    void vHandleAxial( double Vm);

    void vInjectMsg( const Eref& e , double current);


    void vRandInject( const Eref& e , double prob, double current);

    void vSetSolver( const Eref& e, Id hsolve );

    static const Cinfo* initCinfo();

    // utility funcs
    double mtrand( void );

private:
    HSolve* hsolve_;

    static const double EPSILON;

    void copyFields( moose::Compartment* c );

    moose::RNG<double> rng;

};

#endif // _ZOMBIE_COMPARTMENT_H