#include <DifShellBase.h>

Inheritance diagram for DifShellBase:

Collaboration diagram for DifShellBase:

Public Member Functions
void	buffer (const Eref &e, double kf, double kb, double bFree, double bBound)

	DifShellBase ()

void	eqTauPump (const Eref &e, double kP)

void	fInflux (const Eref &e, double I, double fraction)

void	fluxFromIn (const Eref &e, double innerC, double innerThickness)

void	fluxFromOut (const Eref &e, double outerC, double outerThickness)

void	fOutflux (const Eref &e, double I, double fraction)

double	getC (const Eref &e) const

double	getCeq (const Eref &e) const

double	getD (const Eref &e) const

double	getDiameter (const Eref &e) const

double	getInnerArea (const Eref &e) const

double	getLeak (const Eref &e) const

double	getLength (const Eref &e) const

double	getOuterArea (const Eref &e) const

unsigned int	getShapeMode (const Eref &e) const

double	getThickness (const Eref &e) const

double	getValence (const Eref &e) const

double	getVolume (const Eref &e) const

void	hillPump (const Eref &e, double vMax, double Kd, unsigned int hill)

void	influx (const Eref &e, double I)

void	mmPump (const Eref &e, double vMax, double Kd)

void	outflux (const Eref &e, double I)

void	process (const Eref &e, ProcPtr p)

void	reinit (const Eref &e, ProcPtr p)

void	setC (const Eref &e, double C)

void	setCeq (const Eref &e, double Ceq)

void	setD (const Eref &e, double D)

void	setDiameter (const Eref &e, double diameter)

void	setInnerArea (const Eref &e, double innerArea)

void	setLeak (const Eref &e, double leak)

void	setLength (const Eref &e, double length)

void	setOuterArea (const Eref &e, double outerArea)

void	setShapeMode (const Eref &e, unsigned int shapeMode)

void	setThickness (const Eref &e, double thickness)

void	setValence (const Eref &e, double valence)

void	setVolume (const Eref &e, double volume)

void	storeInflux (const Eref &e, double flux)

void	storeOutflux (const Eref &e, double flux)

void	tauPump (const Eref &e, double kP, double Ceq)

virtual void	vBuffer (const Eref &e, double kf, double kb, double bFree, double bBound)=0

virtual void	vEqTauPump (const Eref &e, double kP)=0

virtual void	vFInflux (const Eref &e, double I, double fraction)=0

virtual void	vFluxFromIn (const Eref &e, double innerC, double innerThickness)=0

virtual void	vFluxFromOut (const Eref &e, double outerC, double outerThickness)=0

virtual void	vFOutflux (const Eref &e, double I, double fraction)=0

virtual double	vGetC (const Eref &e) const =0

virtual double	vGetCeq (const Eref &e) const =0

virtual double	vGetD (const Eref &e) const =0

virtual double	vGetDiameter (const Eref &e) const =0

virtual double	vGetInnerArea (const Eref &e) const =0

virtual double	vGetLeak (const Eref &e) const =0

virtual double	vGetLength (const Eref &e) const =0

virtual double	vGetOuterArea (const Eref &e) const =0

virtual unsigned int	vGetShapeMode (const Eref &e) const =0

virtual double	vGetThickness (const Eref &e) const =0

virtual double	vGetValence (const Eref &e) const =0

virtual double	vGetVolume (const Eref &e) const =0

virtual void	vHillPump (const Eref &e, double vMax, double Kd, unsigned int hill)=0

virtual void	vInflux (const Eref &e, double I)=0

virtual void	vMMPump (const Eref &e, double vMax, double Kd)=0

virtual void	vOutflux (const Eref &e, double I)=0

virtual void	vProcess (const Eref &e, ProcPtr p)=0

virtual void	vReinit (const Eref &e, ProcPtr p)=0

virtual void	vSetC (const Eref &e, double C)=0

virtual void	vSetCeq (const Eref &e, double Ceq)=0

virtual void	vSetD (const Eref &e, double D)=0

virtual void	vSetDiameter (const Eref &e, double diameter)=0

virtual void	vSetInnerArea (const Eref &e, double innerArea)=0

virtual void	vSetLeak (const Eref &e, double leak)=0

virtual void	vSetLength (const Eref &e, double length)=0

virtual void	vSetOuterArea (const Eref &e, double outerArea)=0

virtual void	vSetShapeMode (const Eref &e, unsigned int shapeMode)=0

virtual void	vSetThickness (const Eref &e, double thickness)=0

virtual void	vSetValence (const Eref &e, double valence)=0

virtual void	vSetVolume (const Eref &e, double volume)=0

virtual void	vStoreInflux (const Eref &e, double flux)=0

virtual void	vStoreOutflux (const Eref &e, double flux)=0

virtual void	vTauPump (const Eref &e, double kP, double Ceq)=0

Static Public Member Functions
static SrcFinfo1< double > *	concentrationOut ()

static const Cinfo *	initCinfo ()

static SrcFinfo2< double, double > *	innerDifSourceOut ()

static SrcFinfo2< double, double > *	outerDifSourceOut ()

Detailed Description

Definition at line 15 of file DifShellBase.h.

Constructor & Destructor Documentation

DifShellBase::DifShellBase ( )

Definition at line 230 of file DifShellBase.cpp.

231 { ; }

Member Function Documentation

void DifShellBase::buffer	(	const Eref &	e,
		double	kf,
		double	kb,
		double	bFree,
		double	bBound
	)

Definition at line 366 of file DifShellBase.cpp.

References vBuffer().

Referenced by initCinfo().

 {
   vBuffer( e, kf, kb, bFree, bBound );
 }

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SrcFinfo1< double > * DifShellBase::concentrationOut ( )

static

Definition at line 15 of file DifShellBase.cpp.

Referenced by initCinfo(), DifShell::vProcess(), and DifShell::vReinit().

 {
   static SrcFinfo1< double > concentrationOut("concentrationOut",
                           "Sends out concentration");
   return &concentrationOut;
 }

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void DifShellBase::eqTauPump	(	const Eref &	e,
		double	kP
	)

Definition at line 436 of file DifShellBase.cpp.

References vEqTauPump().

Referenced by initCinfo().

 {
   vEqTauPump(e, kP );
 }

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void DifShellBase::fInflux	(	const Eref &	e,
		double	I,
		double	fraction
	)

Definition at line 403 of file DifShellBase.cpp.

References vFInflux().

Referenced by initCinfo().

 {
   vFInflux(e, I, fraction );
 }

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void DifShellBase::fluxFromIn	(	const Eref &	e,
		double	innerC,
		double	innerThickness
	)

Definition at line 383 of file DifShellBase.cpp.

References vFluxFromIn().

Referenced by initCinfo().

 {
   vFluxFromIn( e, innerC, innerThickness );
 }

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void DifShellBase::fluxFromOut	(	const Eref &	e,
		double	outerC,
		double	outerThickness
	)

Definition at line 376 of file DifShellBase.cpp.

References vFluxFromOut().

Referenced by initCinfo().

 {
   vFluxFromOut(e, outerC, outerThickness );
 }

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void DifShellBase::fOutflux	(	const Eref &	e,
		double	I,
		double	fraction
	)

Definition at line 410 of file DifShellBase.cpp.

References vFOutflux().

Referenced by initCinfo().

 {
   vFOutflux(e, I, fraction );
 }

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double DifShellBase::getC ( const Eref & e ) const

Definition at line 237 of file DifShellBase.cpp.

References vGetC().

Referenced by initCinfo().

 {
   return vGetC(e);
 }

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double DifShellBase::getCeq ( const Eref & e ) const

Definition at line 247 of file DifShellBase.cpp.

References vGetCeq().

Referenced by initCinfo().

 {
   return vGetCeq(e);
 }

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double DifShellBase::getD ( const Eref & e ) const

Definition at line 257 of file DifShellBase.cpp.

References vGetD().

Referenced by initCinfo().

 {
   return vGetD(e);
 }

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double DifShellBase::getDiameter ( const Eref & e ) const

Definition at line 307 of file DifShellBase.cpp.

References vGetDiameter().

Referenced by initCinfo().

 {
   return vGetDiameter(e);
 }

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double DifShellBase::getInnerArea ( const Eref & e ) const

Definition at line 347 of file DifShellBase.cpp.

References vGetInnerArea().

Referenced by initCinfo().

 {
   return vGetInnerArea(e);
 }

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double DifShellBase::getLeak ( const Eref & e ) const

Definition at line 277 of file DifShellBase.cpp.

References vGetLeak().

Referenced by initCinfo().

 {
   return vGetLeak(e);
 }

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double DifShellBase::getLength ( const Eref & e ) const

Definition at line 297 of file DifShellBase.cpp.

References vGetLength().

Referenced by initCinfo().

 {
   return vGetLength(e);
 }

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double DifShellBase::getOuterArea ( const Eref & e ) const

Definition at line 337 of file DifShellBase.cpp.

References vGetOuterArea().

Referenced by initCinfo().

 {
   return vGetOuterArea(e);
 }

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unsigned int DifShellBase::getShapeMode ( const Eref & e ) const

Definition at line 287 of file DifShellBase.cpp.

References vGetShapeMode().

Referenced by initCinfo().

 {
   return vGetShapeMode(e);
 }

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double DifShellBase::getThickness ( const Eref & e ) const

Definition at line 317 of file DifShellBase.cpp.

References vGetThickness().

Referenced by initCinfo().

 {
   return vGetThickness(e);
 }

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double DifShellBase::getValence ( const Eref & e ) const

Definition at line 267 of file DifShellBase.cpp.

References vGetValence().

Referenced by initCinfo().

 {
   return vGetValence(e);
 }

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double DifShellBase::getVolume ( const Eref & e ) const

Definition at line 327 of file DifShellBase.cpp.

References vGetVolume().

Referenced by initCinfo().

 {
   return vGetVolume(e);
 }

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void DifShellBase::hillPump	(	const Eref &	e,
		double	vMax,
		double	Kd,
		unsigned int	hill
	)

Definition at line 449 of file DifShellBase.cpp.

References vHillPump().

Referenced by initCinfo().

 {
   vHillPump(e, vMax, Kd, hill );
 }

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void DifShellBase::influx	(	const Eref &	e,
		double	I
	)

Definition at line 391 of file DifShellBase.cpp.

References vInflux().

Referenced by initCinfo().

 {
   vInflux( e, I );
 }

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const Cinfo * DifShellBase::initCinfo ( )

static

Definition at line 34 of file DifShellBase.cpp.

References buffer(), concentrationOut(), difShellBaseCinfo, eqTauPump(), fInflux(), fluxFromIn(), fluxFromOut(), fOutflux(), getC(), getCeq(), getD(), getDiameter(), getInnerArea(), getLeak(), getLength(), getOuterArea(), getShapeMode(), getThickness(), getValence(), getVolume(), hillPump(), influx(), Neutral::initCinfo(), innerDifSourceOut(), mmPump(), outerDifSourceOut(), outflux(), process(), reinit(), setC(), setCeq(), setD(), setDiameter(), setInnerArea(), setLeak(), setLength(), setOuterArea(), setShapeMode(), setThickness(), setValence(), setVolume(), storeInflux(), storeOutflux(), and tauPump().

Referenced by DifShell::initCinfo().

 {
 
   static DestFinfo process( "process",
                 "Handles process call",
                 new ProcOpFunc< DifShellBase>(&DifShellBase::process ) );
   static DestFinfo reinit( "reinit",
                "Reinit happens only in stage 0",
                new ProcOpFunc< DifShellBase>( &DifShellBase::reinit ));
 
   static Finfo* processShared[] = {
     &process, &reinit
   };
 
   static SharedFinfo proc(
               "proc",
               "Shared message to receive Process message from scheduler",
               processShared, sizeof( processShared ) / sizeof( Finfo* ));
 
 
 
 
   static DestFinfo reaction( "reaction",
                  "Here the DifShell receives reaction rates (forward and backward), and concentrations for the "
                  "free-buffer and bound-buffer molecules.",
                  new EpFunc4< DifShellBase, double, double, double, double >( &DifShellBase::buffer ));
 
   static Finfo* bufferShared[] = {
     DifShellBase::concentrationOut(), &reaction
   };
 
   static SharedFinfo buffer( "buffer",
                  "This is a shared message from a DifShell to a Buffer (FixBuffer or DifBuffer). " ,
                  bufferShared,
                  sizeof( bufferShared ) / sizeof( Finfo* ));
 
 
 
 
   static DestFinfo fluxFromOut( "fluxFromOut",
                 "Destination message",
                 new EpFunc2< DifShellBase, double, double > ( &DifShellBase::fluxFromOut ));
 
   static Finfo* innerDifShared[] = {
     &fluxFromOut,  DifShellBase::innerDifSourceOut(),
   };
   static SharedFinfo innerDif( "innerDif",
                    "This shared message (and the next) is between DifShells: adjoining shells exchange information to "
                    "find out the flux between them. "
                    "Using this message, an inner shell sends to, and receives from its outer shell." ,
                    innerDifShared,
                    sizeof( innerDifShared ) / sizeof( Finfo* ));
 
   static DestFinfo fluxFromIn( "fluxFromIn", "",
                    new EpFunc2< DifShellBase, double, double> ( &DifShellBase::fluxFromIn ) );
 
   static Finfo* outerDifShared[] = {
     &fluxFromIn,  DifShellBase::outerDifSourceOut(),
   };
 
   static  SharedFinfo outerDif( "outerDif",
                 "Using this message, an outer shell sends to, and receives from its inner shell." ,
                 outerDifShared,
                 sizeof( outerDifShared ) / sizeof( Finfo* ));
 
   static ElementValueFinfo< DifShellBase, double> C( "C",
                              "Concentration C",// is computed by the DifShell",
                              &DifShellBase::setC,
                              &DifShellBase::getC);
   static ElementValueFinfo< DifShellBase, double> Ceq( "Ceq", "",
                                &DifShellBase::setCeq,
                                &DifShellBase::getCeq);
   static ElementValueFinfo< DifShellBase, double> D( "D", "",
                              &DifShellBase::setD,
                              &DifShellBase::getD);
   static ElementValueFinfo< DifShellBase, double> valence( "valence", "",
                                &DifShellBase::setValence,
                                &DifShellBase::getValence);
   static ElementValueFinfo< DifShellBase, double> leak( "leak", "",
                             &DifShellBase::setLeak,
                             &DifShellBase::getLeak);
   static ElementValueFinfo< DifShellBase, unsigned int> shapeMode( "shapeMode", "",
                                    &DifShellBase::setShapeMode,
                                    &DifShellBase::getShapeMode);
   static ElementValueFinfo< DifShellBase, double> length( "length", "",
                               &DifShellBase::setLength,
                               &DifShellBase::getLength);
   static ElementValueFinfo< DifShellBase, double> diameter( "diameter", "",
                                 &DifShellBase::setDiameter,
                                 &DifShellBase::getDiameter );
   static ElementValueFinfo< DifShellBase, double> thickness( "thickness", "",
                                  &DifShellBase::setThickness,
                                  &DifShellBase::getThickness );
   static ElementValueFinfo< DifShellBase, double> volume( "volume", "",
                               &DifShellBase::setVolume,
                               &DifShellBase::getVolume );
   static ElementValueFinfo< DifShellBase, double> outerArea( "outerArea", "",
                                  &DifShellBase::setOuterArea,
                                  &DifShellBase::getOuterArea);
   static ElementValueFinfo< DifShellBase, double> innerArea( "innerArea", "",
                                  &DifShellBase::setInnerArea,
                                  &DifShellBase::getInnerArea );
 
   static DestFinfo mmPump( "mmPump", "Here DifShell receives pump outflux",
                new EpFunc2< DifShellBase, double, double >( &DifShellBase::mmPump ) );
   static DestFinfo influx( "influx", "",
                new EpFunc1< DifShellBase, double > (&DifShellBase::influx ));
   static DestFinfo outflux( "outflux", "",
                 new EpFunc1< DifShellBase, double >( &DifShellBase::influx ));
   static DestFinfo fInflux( "fInflux", "",
                 new EpFunc2< DifShellBase, double, double >( &DifShellBase::fInflux ));
   static DestFinfo fOutflux( "fOutflux", "",
                  new EpFunc2< DifShellBase, double, double> (&DifShellBase::fOutflux ));
   static DestFinfo storeInflux( "storeInflux", "",
                 new EpFunc1< DifShellBase, double >( &DifShellBase::storeInflux ) );
   static DestFinfo storeOutflux( "storeOutflux", "",
                  new EpFunc1< DifShellBase, double > ( &DifShellBase::storeOutflux ) );
   static DestFinfo tauPump( "tauPump","",
                 new EpFunc2< DifShellBase, double, double >( &DifShellBase::tauPump ) );
   static DestFinfo eqTauPump( "eqTauPump", "",
                   new EpFunc1< DifShellBase, double >( &DifShellBase::eqTauPump ) );
   static DestFinfo hillPump( "hillPump", "",
                  new EpFunc3< DifShellBase, double, double, unsigned int >( &DifShellBase::hillPump ) );
   static Finfo* difShellBaseFinfos[] = {
     // Field definitions
     &C,
     &Ceq,
     &D,
     &valence,
     &leak,
     &shapeMode,
     &length,
     &diameter,
     &thickness,
     &volume,
     &outerArea,
     &innerArea,
     // MsgSrc definitions
 
     // SharedFinfo definitions
     &proc,
     &buffer,
     concentrationOut(),
     innerDifSourceOut(),
     outerDifSourceOut(),
     &innerDif,
     &outerDif,
     // DestFinfo definitions
     &influx,
     &outflux,
     &fInflux,
     &fOutflux,
     &storeInflux,
     &storeOutflux,
     &tauPump,
     &eqTauPump,
     &mmPump,
     &hillPump,
   };
 
   static string doc[] =
     {
       "Name", "DifShellBase",
       "Author", "Niraj Dudani. Ported to async13 by Subhasis Ray/Asia Jedrzejewska-Szmek",
       "Description", "DifShell object: Models diffusion of an ion (typically calcium) within an "
       "electric compartment. A DifShell is an iso-concentration region with respect to "
       "the ion. Adjoining DifShells exchange flux of this ion, and also keep track of "
       "changes in concentration due to pumping, buffering and channel currents, by "
       "talking to the appropriate objects.",
     };
   static ZeroSizeDinfo< int > dinfo;
   //static Dinfo< DifShellBase> dinfo;
   static Cinfo difShellBaseCinfo(
                  "DifShellBase",
                  Neutral::initCinfo(),
                  difShellBaseFinfos,
                  sizeof( difShellBaseFinfos ) / sizeof( Finfo* ),
                  &dinfo,
                  doc,
                  sizeof( doc ) / sizeof( string ));
 
   return &difShellBaseCinfo;
 }

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SrcFinfo2< double, double > * DifShellBase::innerDifSourceOut ( )

static

Definition at line 22 of file DifShellBase.cpp.

Referenced by initCinfo(), DifShell::vProcess(), and DifShell::vReinit().

                                                             {
   static SrcFinfo2< double, double > sourceOut("innerDifSourceOut",
                            "Sends out source information.");
   return &sourceOut;
 }

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void DifShellBase::mmPump	(	const Eref &	e,
		double	vMax,
		double	Kd
	)

Definition at line 442 of file DifShellBase.cpp.

References vMMPump().

Referenced by initCinfo().

 {
   vMMPump(e, vMax, Kd );
 }

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SrcFinfo2< double, double > * DifShellBase::outerDifSourceOut ( )

static

Definition at line 28 of file DifShellBase.cpp.

Referenced by initCinfo(), DifShell::vProcess(), and DifShell::vReinit().

                                                             {
   static SrcFinfo2< double, double > sourceOut("outerDifSourceOut",
                            "Sends out source information.");
   return &sourceOut;
 }

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void DifShellBase::outflux	(	const Eref &	e,
		double	I
	)

Definition at line 397 of file DifShellBase.cpp.

References vOutflux().

Referenced by initCinfo().

 {
   vOutflux(e, I );
 }

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void DifShellBase::process	(	const Eref &	e,
		ProcPtr	p
	)

Definition at line 361 of file DifShellBase.cpp.

References vProcess().

Referenced by initCinfo().

 {
   vProcess( e, p );
 }

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void DifShellBase::reinit	(	const Eref &	e,
		ProcPtr	p
	)

Definition at line 356 of file DifShellBase.cpp.

References vReinit().

Referenced by initCinfo().

 {
   vReinit( e, p );
 }

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void DifShellBase::setC	(	const Eref &	e,
		double	C
	)

Definition at line 233 of file DifShellBase.cpp.

References vSetC().

Referenced by initCinfo().

 {
   vSetC(e,C);
 }

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void DifShellBase::setCeq	(	const Eref &	e,
		double	Ceq
	)

Definition at line 242 of file DifShellBase.cpp.

References vSetCeq().

Referenced by initCinfo().

 {
   vSetCeq(e,Ceq);
 }

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void DifShellBase::setD	(	const Eref &	e,
		double	D
	)

Definition at line 252 of file DifShellBase.cpp.

References vSetD().

Referenced by initCinfo().

 {
   vSetD(e,D);
 }

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void DifShellBase::setDiameter	(	const Eref &	e,
		double	diameter
	)

Definition at line 302 of file DifShellBase.cpp.

References vSetDiameter().

Referenced by initCinfo().

 {
   vSetDiameter(e,diameter);
 }

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void DifShellBase::setInnerArea	(	const Eref &	e,
		double	innerArea
	)

Definition at line 342 of file DifShellBase.cpp.

References vSetInnerArea().

Referenced by initCinfo().

 {
   vSetInnerArea(e,innerArea);
 }

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void DifShellBase::setLeak	(	const Eref &	e,
		double	leak
	)

Definition at line 272 of file DifShellBase.cpp.

References vSetLeak().

Referenced by initCinfo().

 {
   vSetLeak(e,leak);
 }

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void DifShellBase::setLength	(	const Eref &	e,
		double	length
	)

Definition at line 292 of file DifShellBase.cpp.

References vSetLength().

Referenced by initCinfo().

 {
   vSetLength(e,length);
 }

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void DifShellBase::setOuterArea	(	const Eref &	e,
		double	outerArea
	)

Definition at line 332 of file DifShellBase.cpp.

References vSetOuterArea().

Referenced by initCinfo().

 {
   vSetOuterArea(e,outerArea);
 }

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void DifShellBase::setShapeMode	(	const Eref &	e,
		unsigned int	shapeMode
	)

Definition at line 282 of file DifShellBase.cpp.

References vSetShapeMode().

Referenced by initCinfo().

 {
   vSetShapeMode(e,shapeMode);
 }

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void DifShellBase::setThickness	(	const Eref &	e,
		double	thickness
	)

Definition at line 312 of file DifShellBase.cpp.

References vSetThickness().

Referenced by initCinfo().

 {
   vSetThickness(e,thickness);
 }

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void DifShellBase::setValence	(	const Eref &	e,
		double	valence
	)

Definition at line 262 of file DifShellBase.cpp.

References vSetValence().

Referenced by initCinfo().

 {
   vSetValence(e,valence);
 }

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void DifShellBase::setVolume	(	const Eref &	e,
		double	volume
	)

Definition at line 322 of file DifShellBase.cpp.

References vSetVolume().

Referenced by initCinfo().

 {
   vSetVolume(e,volume);
 }

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void DifShellBase::storeInflux	(	const Eref &	e,
		double	flux
	)

Definition at line 417 of file DifShellBase.cpp.

References vStoreInflux().

Referenced by initCinfo().

 {
   vStoreInflux( e, flux );
 }

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void DifShellBase::storeOutflux	(	const Eref &	e,
		double	flux
	)

Definition at line 423 of file DifShellBase.cpp.

References vStoreOutflux().

Referenced by initCinfo().

 {
   vStoreOutflux(e, flux );
 }

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void DifShellBase::tauPump	(	const Eref &	e,
		double	kP,
		double	Ceq
	)

Definition at line 429 of file DifShellBase.cpp.

References vTauPump().

Referenced by initCinfo().

 {
   vTauPump( e, kP, Ceq );
 }

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virtual void DifShellBase::vBuffer	(	const Eref &	e,
		double	kf,
		double	kb,
		double	bFree,
		double	bBound
	)

pure virtual

Implemented in DifShell.

Referenced by buffer().

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virtual void DifShellBase::vEqTauPump	(	const Eref &	e,
		double	kP
	)

pure virtual

Implemented in DifShell.

Referenced by eqTauPump().

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virtual void DifShellBase::vFInflux	(	const Eref &	e,
		double	I,
		double	fraction
	)

pure virtual

Implemented in DifShell.

Referenced by fInflux().

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virtual void DifShellBase::vFluxFromIn	(	const Eref &	e,
		double	innerC,
		double	innerThickness
	)

pure virtual

Implemented in DifShell.

Referenced by fluxFromIn().

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virtual void DifShellBase::vFluxFromOut	(	const Eref &	e,
		double	outerC,
		double	outerThickness
	)

pure virtual

Implemented in DifShell.

Referenced by fluxFromOut().

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virtual void DifShellBase::vFOutflux	(	const Eref &	e,
		double	I,
		double	fraction
	)

pure virtual

Implemented in DifShell.

Referenced by fOutflux().

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virtual double DifShellBase::vGetC ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getC().

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virtual double DifShellBase::vGetCeq ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getCeq().

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virtual double DifShellBase::vGetD ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getD().

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virtual double DifShellBase::vGetDiameter ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getDiameter().

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virtual double DifShellBase::vGetInnerArea ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getInnerArea().

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virtual double DifShellBase::vGetLeak ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getLeak().

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virtual double DifShellBase::vGetLength ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getLength().

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virtual double DifShellBase::vGetOuterArea ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getOuterArea().

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virtual unsigned int DifShellBase::vGetShapeMode ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getShapeMode().

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virtual double DifShellBase::vGetThickness ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getThickness().

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virtual double DifShellBase::vGetValence ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getValence().

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virtual double DifShellBase::vGetVolume ( const Eref & e ) const

pure virtual

Implemented in DifShell.

Referenced by getVolume().

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virtual void DifShellBase::vHillPump	(	const Eref &	e,
		double	vMax,
		double	Kd,
		unsigned int	hill
	)

pure virtual

Implemented in DifShell.

Referenced by hillPump().

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virtual void DifShellBase::vInflux	(	const Eref &	e,
		double	I
	)

pure virtual

Implemented in DifShell.

Referenced by influx().

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virtual void DifShellBase::vMMPump	(	const Eref &	e,
		double	vMax,
		double	Kd
	)

pure virtual

Implemented in DifShell.

Referenced by mmPump().

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virtual void DifShellBase::vOutflux	(	const Eref &	e,
		double	I
	)

pure virtual

Implemented in DifShell.

Referenced by outflux().

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virtual void DifShellBase::vProcess	(	const Eref &	e,
		ProcPtr	p
	)

pure virtual

Implemented in DifShell.

Referenced by process().

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virtual void DifShellBase::vReinit	(	const Eref &	e,
		ProcPtr	p
	)

pure virtual

Implemented in DifShell.

Referenced by reinit().

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virtual void DifShellBase::vSetC	(	const Eref &	e,
		double	C
	)

pure virtual

Implemented in DifShell.

Referenced by setC().

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virtual void DifShellBase::vSetCeq	(	const Eref &	e,
		double	Ceq
	)

pure virtual

Implemented in DifShell.

Referenced by setCeq().

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virtual void DifShellBase::vSetD	(	const Eref &	e,
		double	D
	)

pure virtual

Implemented in DifShell.

Referenced by setD().

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virtual void DifShellBase::vSetDiameter	(	const Eref &	e,
		double	diameter
	)

pure virtual

Implemented in DifShell.

Referenced by setDiameter().

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virtual void DifShellBase::vSetInnerArea	(	const Eref &	e,
		double	innerArea
	)

pure virtual

Implemented in DifShell.

Referenced by setInnerArea().

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virtual void DifShellBase::vSetLeak	(	const Eref &	e,
		double	leak
	)

pure virtual

Implemented in DifShell.

Referenced by setLeak().

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virtual void DifShellBase::vSetLength	(	const Eref &	e,
		double	length
	)

pure virtual

Implemented in DifShell.

Referenced by setLength().

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virtual void DifShellBase::vSetOuterArea	(	const Eref &	e,
		double	outerArea
	)

pure virtual

Implemented in DifShell.

Referenced by setOuterArea().

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virtual void DifShellBase::vSetShapeMode	(	const Eref &	e,
		unsigned int	shapeMode
	)

pure virtual

Implemented in DifShell.

Referenced by setShapeMode().

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virtual void DifShellBase::vSetThickness	(	const Eref &	e,
		double	thickness
	)

pure virtual

Implemented in DifShell.

Referenced by setThickness().

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virtual void DifShellBase::vSetValence	(	const Eref &	e,
		double	valence
	)

pure virtual

Implemented in DifShell.

Referenced by setValence().

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virtual void DifShellBase::vSetVolume	(	const Eref &	e,
		double	volume
	)

pure virtual

Implemented in DifShell.

Referenced by setVolume().

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virtual void DifShellBase::vStoreInflux	(	const Eref &	e,
		double	flux
	)

pure virtual

Implemented in DifShell.

Referenced by storeInflux().

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virtual void DifShellBase::vStoreOutflux	(	const Eref &	e,
		double	flux
	)

pure virtual

Implemented in DifShell.

Referenced by storeOutflux().

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virtual void DifShellBase::vTauPump	(	const Eref &	e,
		double	kP,
		double	Ceq
	)

pure virtual

Implemented in DifShell.

Referenced by tauPump().

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The documentation for this class was generated from the following files:

moose-core/biophysics/DifShellBase.h
moose-core/biophysics/DifShellBase.cpp

Public Member Functions

Static Public Member Functions

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation