#include <HHChannelBase.h>

Inheritance diagram for HHChannelBase:

Collaboration diagram for HHChannelBase:

Public Member Functions
void	createGate (const Eref &e, string gateType)

int	getInstant (const Eref &e) const

unsigned int	getNumXgates () const

unsigned int	getNumYgates () const
	Returns 1 if Y gate present, otherwise 0. More...

unsigned int	getNumZgates () const
	Returns 1 if Z gate present, otherwise 0. More...

int	getUseConcentration (const Eref &e) const

double	getX (const Eref &e) const

HHGate *	getXgate (unsigned int i)

double	getXpower (const Eref &e) const

double	getY (const Eref &e) const

HHGate *	getYgate (unsigned int i)

double	getYpower (const Eref &e) const

double	getZ (const Eref &e) const

HHGate *	getZgate (unsigned int i)

double	getZpower (const Eref &e) const

void	handleConc (const Eref &e, double conc)

	HHChannelBase ()

void	setInstant (const Eref &e, int Instant)

void	setNumGates (unsigned int num)

void	setUseConcentration (const Eref &e, int value)

void	setX (const Eref &e, double X)

void	setXpower (const Eref &e, double Xpower)

void	setY (const Eref &e, double Y)

void	setYpower (const Eref &e, double Ypower)

void	setZ (const Eref &e, double Z)

void	setZpower (const Eref &e, double Zpower)

virtual void	vCreateGate (const Eref &e, string gateType)=0

virtual int	vGetInstant (const Eref &e) const =0

double	vGetModulation (const Eref &e) const

virtual double	vGetX (const Eref &e) const =0

virtual HHGate *	vGetXgate (unsigned int i) const =0

virtual double	vGetY (const Eref &e) const =0

virtual HHGate *	vGetYgate (unsigned int i) const =0

virtual double	vGetZ (const Eref &e) const =0

virtual HHGate *	vGetZgate (unsigned int i) const =0

virtual void	vHandleConc (const Eref &e, double conc)=0

virtual void	vSetInstant (const Eref &e, int Instant)=0

virtual void	vSetSolver (const Eref &e, Id hsolve)

virtual void	vSetUseConcentration (const Eref &e, int value)=0

virtual void	vSetX (const Eref &e, double X)=0

virtual void	vSetXpower (const Eref &e, double Xpower)=0

virtual void	vSetY (const Eref &e, double Y)=0

virtual void	vSetYpower (const Eref &e, double Ypower)=0

virtual void	vSetZ (const Eref &e, double Z)=0

virtual void	vSetZpower (const Eref &e, double Zpower)=0

	~HHChannelBase ()

Public Member Functions inherited from ChanBase
	ChanBase ()

double	getEk (const Eref &e) const

double	getGbar (const Eref &e) const

double	getGk (const Eref &e) const

double	getIk (const Eref &e) const

double	getModulation (const Eref &e) const

void	handleVm (double Vm)

void	process (const Eref &e, const ProcPtr info)

void	reinit (const Eref &e, const ProcPtr info)

void	setEk (const Eref &e, double Ek)

void	setGbar (const Eref &e, double Gbar)

void	setGk (const Eref &e, double Gk)

void	setIk (const Eref &e, double Ic)

void	setModulation (const Eref &e, double modulation)

virtual double	vGetEk (const Eref &e) const =0

virtual double	vGetGbar (const Eref &e) const =0

virtual double	vGetGk (const Eref &e) const =0

virtual double	vGetIk (const Eref &e) const =0

virtual void	vHandleVm (double Vm)=0

virtual void	vProcess (const Eref &e, const ProcPtr info)=0

virtual void	vReinit (const Eref &e, const ProcPtr info)=0

virtual void	vSetEk (const Eref &e, double Ek)=0

virtual void	vSetGbar (const Eref &e, double Gbar)=0

virtual void	vSetGk (const Eref &e, double Gk)=0

virtual void	vSetIk (const Eref &e, double Ik)=0

virtual void	vSetModulation (const Eref &e, double modulation)=0

	~ChanBase ()

Static Public Member Functions
static const Cinfo *	initCinfo ()

static double	power1 (double x, double p)

static double	power2 (double x, double p)

static double	power3 (double x, double p)

static double	power4 (double x, double p)

static double	powerN (double x, double p)

static PFDD	selectPower (double power)

static void	zombify (Element orig, const Cinfo zClass, Id hsolve)

Static Public Member Functions inherited from ChanBase
static SrcFinfo2< double, double > *	channelOut ()

static SrcFinfo1< double > *	IkOut ()

static const Cinfo *	initCinfo ()
	Specify the Class Info static variable for initialization. More...

static SrcFinfo1< double > *	permeability ()

Protected Attributes
double	modulation_
	Value used to scale channel conductance up or down. More...

bool	useConcentration_
	Flag for use of conc for input to Z gate calculations. More...

double	Xpower_
	Exponent for X gate. More...

double	Ypower_
	Exponent for Y gate. More...

double	Zpower_
	Exponent for Z gate. More...

Detailed Description

The HHChannelBase is the base class for defining Hodgkin-Huxley type channels, specifically dealing with derivatives used in the HSolver. This is derived from the ChanBase rather than the ChanCommon, since the Zombie classes used in the HSolver will not use the ChanCommon fields.

Definition at line 24 of file HHChannelBase.h.

Constructor & Destructor Documentation

HHChannelBase::HHChannelBase ( )

Definition at line 170 of file HHChannelBase.cpp.

     :
             Xpower_( 0.0 ),
             Ypower_( 0.0 ),
             Zpower_( 0.0 ),
             useConcentration_( 0 ),
             modulation_( 1.0 )
 {;}

HHChannelBase::~HHChannelBase ( )

Definition at line 179 of file HHChannelBase.cpp.

180 {;}

Member Function Documentation

void HHChannelBase::createGate	(	const Eref &	e,
		string	gateType
	)

Function for safely creating each gate, identified by strings as X, Y and Z. Will only work on a new channel, not on a copy. The idea is that the gates are always referred to the original 'library' channel, and their contents cannot be touched except by the original.

Definition at line 218 of file HHChannelBase.cpp.

References vCreateGate().

Referenced by initCinfo(), and HHChannel::setGatePower().

 {
     vCreateGate( e, gateType );
 }

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int HHChannelBase::getInstant ( const Eref & e ) const

Definition at line 246 of file HHChannelBase.cpp.

References vGetInstant().

Referenced by initCinfo().

 {
     return vGetInstant( e );
 }

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unsigned int HHChannelBase::getNumXgates ( ) const

Access function for the number of Xgates. Gives 1 if present, otherwise 0.

Definition at line 327 of file HHChannelBase.cpp.

References vGetXgate().

Referenced by initCinfo().

 {
     return ( vGetXgate(0) != 0 );
 }

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unsigned int HHChannelBase::getNumYgates ( ) const

Returns 1 if Y gate present, otherwise 0.

Definition at line 332 of file HHChannelBase.cpp.

References vGetYgate().

Referenced by initCinfo().

 {
     return ( vGetYgate(0) != 0 );
 }

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unsigned int HHChannelBase::getNumZgates ( ) const

Returns 1 if Z gate present, otherwise 0.

Definition at line 337 of file HHChannelBase.cpp.

References vGetZgate().

Referenced by initCinfo().

 {
     return ( vGetZgate(0) != 0 );
 }

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int HHChannelBase::getUseConcentration ( const Eref & e ) const

Definition at line 284 of file HHChannelBase.cpp.

References useConcentration_.

Referenced by initCinfo(), and zombify().

 {
     return useConcentration_;
 }

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double HHChannelBase::getX ( const Eref & e ) const

Definition at line 255 of file HHChannelBase.cpp.

References vGetX().

Referenced by initCinfo().

 {
     return vGetX( e );
 }

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HHGate * HHChannelBase::getXgate ( unsigned int i )

Access function used for the X gate. The index is ignored.

Definition at line 309 of file HHChannelBase.cpp.

References vGetXgate().

Referenced by initCinfo().

 {
     return vGetXgate( i );
 }

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double HHChannelBase::getXpower ( const Eref & e ) const

Definition at line 227 of file HHChannelBase.cpp.

References Xpower_.

Referenced by initCinfo(), and zombify().

 {
     return Xpower_;
 }

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double HHChannelBase::getY ( const Eref & e ) const

Definition at line 264 of file HHChannelBase.cpp.

References vGetY().

Referenced by initCinfo().

 {
     return vGetY( e );
 }

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HHGate * HHChannelBase::getYgate ( unsigned int i )

Access function used for the Y gate. The index is ignored.

Definition at line 314 of file HHChannelBase.cpp.

References vGetYgate().

Referenced by initCinfo().

 {
     return vGetYgate( i );
 }

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double HHChannelBase::getYpower ( const Eref & e ) const

Definition at line 232 of file HHChannelBase.cpp.

References Ypower_.

Referenced by initCinfo(), and zombify().

 {
     return Ypower_;
 }

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double HHChannelBase::getZ ( const Eref & e ) const

Definition at line 273 of file HHChannelBase.cpp.

References vGetZ().

Referenced by initCinfo().

 {
     return vGetZ( e );
 }

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HHGate * HHChannelBase::getZgate ( unsigned int i )

Access function used for the Z gate. The index is ignored.

Definition at line 319 of file HHChannelBase.cpp.

References vGetZgate().

Referenced by initCinfo().

 {
     return vGetZgate( i );
 }

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double HHChannelBase::getZpower ( const Eref & e ) const

Definition at line 237 of file HHChannelBase.cpp.

References Zpower_.

Referenced by initCinfo(), and zombify().

 {
     return Zpower_;
 }

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void HHChannelBase::handleConc	(	const Eref &	e,
		double	conc
	)

Assign the local conc_ to the incoming conc from the concentration calculations for the compartment. Typically the message source will be a CaConc object, but there are other options for computing the conc.

Definition at line 298 of file HHChannelBase.cpp.

References vHandleConc().

Referenced by initCinfo().

 {
     vHandleConc( e, conc );
 }

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const Cinfo * HHChannelBase::initCinfo ( )

static

Definition at line 16 of file HHChannelBase.cpp.

References createGate(), getInstant(), getNumXgates(), getNumYgates(), getNumZgates(), getUseConcentration(), getX(), getXgate(), getXpower(), getY(), getYgate(), getYpower(), getZ(), getZgate(), getZpower(), handleConc(), ChanBase::initCinfo(), HHGate::initCinfo(), setInstant(), setNumGates(), setUseConcentration(), setX(), setXpower(), setY(), setYpower(), setZ(), and setZpower().

Referenced by ZombieHHChannel::initCinfo(), and HHChannel::initCinfo().

 {
     // Shared messages
 
     // Field definitions
         static ElementValueFinfo< HHChannelBase, double > Xpower( "Xpower",
             "Power for X gate",
             &HHChannelBase::setXpower,
             &HHChannelBase::getXpower
         );
         static ElementValueFinfo< HHChannelBase, double > Ypower( "Ypower",
             "Power for Y gate",
             &HHChannelBase::setYpower,
             &HHChannelBase::getYpower
         );
         static ElementValueFinfo< HHChannelBase, double > Zpower( "Zpower",
             "Power for Z gate",
             &HHChannelBase::setZpower,
             &HHChannelBase::getZpower
         );
         static ElementValueFinfo< HHChannelBase, int > instant( "instant",
             "Bitmapped flag: bit 0 = Xgate, bit 1 = Ygate, bit 2 = Zgate"
             "When true, specifies that the lookup table value should be"
             "used directly as the state of the channel, rather than used"
             "as a rate term for numerical integration for the state",
             &HHChannelBase::setInstant,
             &HHChannelBase::getInstant
         );
         static ElementValueFinfo< HHChannelBase, double > X( "X",
             "State variable for X gate",
             &HHChannelBase::setX,
             &HHChannelBase::getX
         );
         static ElementValueFinfo< HHChannelBase, double > Y( "Y",
             "State variable for Y gate",
             &HHChannelBase::setY,
             &HHChannelBase::getY
         );
         static ElementValueFinfo< HHChannelBase, double > Z( "Z",
             "State variable for Y gate",
             &HHChannelBase::setZ,
             &HHChannelBase::getZ
         );
         static ElementValueFinfo< HHChannelBase, int > useConcentration(
             "useConcentration",
             "Flag: when true, use concentration message rather than Vm to"
             "control Z gate",
             &HHChannelBase::setUseConcentration,
             &HHChannelBase::getUseConcentration
         );
 
 // MsgSrc definitions
     // IkOut SrcFinfo defined in base classes.
 
 // MsgDest definitions
         static DestFinfo concen( "concen",
             "Incoming message from Concen object to specific conc to use"
             "in the Z gate calculations",
             new EpFunc1< HHChannelBase, double >( &HHChannelBase::handleConc )
         );
         static DestFinfo createGate( "createGate",
             "Function to create specified gate."
             "Argument: Gate type [X Y Z]",
             new EpFunc1< HHChannelBase, string >( &HHChannelBase::createGate )
         );
 // FieldElementFinfo definition for HHGates. Note that these are made
 // with the deferCreate flag off, so that the HHGates are created
 // right away even if they are empty.
 // Assume only a single entry allocated in each gate.
         static FieldElementFinfo< HHChannelBase, HHGate > gateX( "gateX",
             "Sets up HHGate X for channel",
             HHGate::initCinfo(),
             &HHChannelBase::getXgate,
             &HHChannelBase::setNumGates,
             &HHChannelBase::getNumXgates
             // 1
         );
         static FieldElementFinfo< HHChannelBase, HHGate > gateY( "gateY",
             "Sets up HHGate Y for channel",
             HHGate::initCinfo(),
             &HHChannelBase::getYgate,
             &HHChannelBase::setNumGates,
             &HHChannelBase::getNumYgates
             // 1
         );
         static FieldElementFinfo< HHChannelBase, HHGate > gateZ( "gateZ",
             "Sets up HHGate Z for channel",
             HHGate::initCinfo(),
             &HHChannelBase::getZgate,
             &HHChannelBase::setNumGates,
             &HHChannelBase::getNumZgates
             // 1
         );
 
     static Finfo* HHChannelBaseFinfos[] =
     {
         &Xpower,            // Value
         &Ypower,            // Value
         &Zpower,            // Value
         &instant,           // Value
         &X,                 // Value
         &Y,                 // Value
         &Z,                 // Value
         &useConcentration,  // Value
         &concen,            // Dest
         &createGate,        // Dest
         &gateX,             // FieldElement
         &gateY,             // FieldElement
         &gateZ              // FieldElement
     };
 
     static string doc[] =
     {
         "Name", "HHChannelBase",
         "Author", "Upinder S. Bhalla, 2014, NCBS",
         "Description", "HHChannelBase: Base class for "
         "Hodgkin-Huxley type voltage-gated Ion channels. Something "
         "like the old tabchannel from GENESIS, but also presents "
         "a similar interface as hhchan from GENESIS. ",
     };
 
     static  ZeroSizeDinfo< int > dinfo;
 
     static Cinfo HHChannelBaseCinfo(
         "HHChannelBase",
         ChanBase::initCinfo(),
         HHChannelBaseFinfos,
         sizeof( HHChannelBaseFinfos )/sizeof(Finfo *),
                 &dinfo,
                 doc,
                 sizeof(doc)/sizeof(string)
     );
 
     return &HHChannelBaseCinfo;
 }

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static double HHChannelBase::power1	(	double	x,
		double	p
	)

inlinestatic

Definition at line 153 of file HHChannelBase.h.

Referenced by selectPower().

                                                    {
             return x;
         }

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static double HHChannelBase::power2	(	double	x,
		double	p
	)

inlinestatic

Definition at line 156 of file HHChannelBase.h.

Referenced by power4(), and selectPower().

                                                    {
             return x * x;
         }

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static double HHChannelBase::power3	(	double	x,
		double	p
	)

inlinestatic

Definition at line 159 of file HHChannelBase.h.

Referenced by selectPower().

                                                    {
             return x * x * x;
         }

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static double HHChannelBase::power4	(	double	x,
		double	p
	)

inlinestatic

Definition at line 162 of file HHChannelBase.h.

References power2().

Referenced by selectPower().

                                                    {
             return power2( x * x, p );
         }

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double HHChannelBase::powerN	(	double	x,
		double	p
	)

static

Definition at line 344 of file HHChannelBase.cpp.

References moose::log().

Referenced by selectPower().

 {
     if ( x > 0.0 )
         return exp( p * log( x ) );
     return 0.0;
 }

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PFDD HHChannelBase::selectPower ( double power )

static

Definition at line 351 of file HHChannelBase.cpp.

References doubleEq(), power1(), power2(), power3(), power4(), and powerN().

Referenced by HHChannel::vSetXpower(), HHChannel::vSetYpower(), and HHChannel::vSetZpower().

 {
     if ( doubleEq( power, 0.0 ) )
         return powerN;
     else if ( doubleEq( power, 1.0 ) )
         return power1;
     else if ( doubleEq( power, 2.0 ) )
         return power2;
     else if ( doubleEq( power, 3.0 ) )
         return power3;
     else if ( doubleEq( power, 4.0 ) )
         return power4;
     else
         return powerN;
 }

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void HHChannelBase::setInstant	(	const Eref &	e,
		int	Instant
	)

Definition at line 242 of file HHChannelBase.cpp.

References vSetInstant().

Referenced by initCinfo().

 {
     vSetInstant( e, instant );
 }

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void HHChannelBase::setNumGates ( unsigned int num )

Dummy assignment function for the number of gates.

Definition at line 324 of file HHChannelBase.cpp.

Referenced by initCinfo().

325 { ; }

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void HHChannelBase::setUseConcentration	(	const Eref &	e,
		int	value
	)

Definition at line 278 of file HHChannelBase.cpp.

References useConcentration_, value, and vSetUseConcentration().

Referenced by initCinfo().

 {
     useConcentration_ = value;
     vSetUseConcentration( e, value );
 }

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void HHChannelBase::setX	(	const Eref &	e,
		double	X
	)

Definition at line 251 of file HHChannelBase.cpp.

References vSetX().

Referenced by initCinfo().

 {
     vSetX( e, X );
 }

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void HHChannelBase::setXpower	(	const Eref &	e,
		double	power
	)

Assigns the Xpower for this gate. If the gate exists and has only this element for input, then change the gate value. If the gate exists and has multiple parents, then make a new gate. If the gate does not exist, make a new gate

Definition at line 200 of file HHChannelBase.cpp.

References checkPower(), and vSetXpower().

Referenced by initCinfo().

 {
     if ( checkPower( power ) )
         vSetXpower( e, power );
 }

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void HHChannelBase::setY	(	const Eref &	e,
		double	Y
	)

Definition at line 260 of file HHChannelBase.cpp.

References vSetY().

Referenced by initCinfo().

 {
     vSetY( e, Y );
 }

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void HHChannelBase::setYpower	(	const Eref &	e,
		double	Ypower
	)

Definition at line 206 of file HHChannelBase.cpp.

References checkPower(), and vSetYpower().

Referenced by initCinfo().

 {
     if ( checkPower( power ) )
         vSetYpower( e, power );
 }

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void HHChannelBase::setZ	(	const Eref &	e,
		double	Z
	)

Definition at line 269 of file HHChannelBase.cpp.

References vSetZ().

Referenced by initCinfo().

 {
     vSetZ( e, Z );
 }

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void HHChannelBase::setZpower	(	const Eref &	e,
		double	Zpower
	)

Definition at line 212 of file HHChannelBase.cpp.

References checkPower(), and vSetZpower().

Referenced by initCinfo().

 {
     if ( checkPower( power ) )
         vSetZpower( e, power );
 }

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virtual void HHChannelBase::vCreateGate	(	const Eref &	e,
		string	gateType
	)

pure virtual

Implemented in HHChannel.

Referenced by createGate().

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virtual int HHChannelBase::vGetInstant ( const Eref & e ) const

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by getInstant().

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double HHChannelBase::vGetModulation ( const Eref & e ) const

virtual

Implements ChanBase.

Definition at line 289 of file HHChannelBase.cpp.

References modulation_.

 {
     return modulation_;
 }

virtual double HHChannelBase::vGetX ( const Eref & e ) const

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by getX().

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virtual HHGate* HHChannelBase::vGetXgate ( unsigned int i ) const

pure virtual

Implemented in HHChannel, and ZombieHHChannel.

Referenced by getNumXgates(), and getXgate().

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virtual double HHChannelBase::vGetY ( const Eref & e ) const

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by getY().

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virtual HHGate* HHChannelBase::vGetYgate ( unsigned int i ) const

pure virtual

Implemented in HHChannel, and ZombieHHChannel.

Referenced by getNumYgates(), and getYgate().

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virtual double HHChannelBase::vGetZ ( const Eref & e ) const

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by getZ().

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virtual HHGate* HHChannelBase::vGetZgate ( unsigned int i ) const

pure virtual

Implemented in HHChannel, and ZombieHHChannel.

Referenced by getNumZgates(), and getZgate().

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virtual void HHChannelBase::vHandleConc	(	const Eref &	e,
		double	conc
	)

pure virtual

Implemented in HHChannel, and ZombieHHChannel.

Referenced by handleConc().

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virtual void HHChannelBase::vSetInstant	(	const Eref &	e,
		int	Instant
	)

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by setInstant().

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void HHChannelBase::vSetSolver	(	const Eref &	e,
		Id	hsolve
	)

virtual

Reimplemented in ZombieHHChannel.

Definition at line 368 of file HHChannelBase.cpp.

Referenced by zombify().

369 {;}

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virtual void HHChannelBase::vSetUseConcentration	(	const Eref &	e,
		int	value
	)

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by setUseConcentration().

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virtual void HHChannelBase::vSetX	(	const Eref &	e,
		double	X
	)

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by setX().

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virtual void HHChannelBase::vSetXpower	(	const Eref &	e,
		double	Xpower
	)

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by setXpower(), and zombify().

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virtual void HHChannelBase::vSetY	(	const Eref &	e,
		double	Y
	)

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by setY().

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virtual void HHChannelBase::vSetYpower	(	const Eref &	e,
		double	Ypower
	)

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by setYpower(), and zombify().

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virtual void HHChannelBase::vSetZ	(	const Eref &	e,
		double	Z
	)

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by setZ().

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virtual void HHChannelBase::vSetZpower	(	const Eref &	e,
		double	Zpower
	)

pure virtual

Implemented in ZombieHHChannel, and HHChannel.

Referenced by setZpower(), and zombify().

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void HHChannelBase::zombify	(	Element *	orig,
		const Cinfo *	zClass,
		Id	hsolve
	)

static

Definition at line 371 of file HHChannelBase.cpp.

References Element::cinfo(), Eref::data(), getUseConcentration(), getXpower(), getYpower(), getZpower(), Element::localDataStart(), Element::numLocalData(), ChanBase::vGetEk(), ChanBase::vGetGbar(), ChanBase::vSetEk(), ChanBase::vSetGbar(), vSetSolver(), vSetXpower(), vSetYpower(), vSetZpower(), and Element::zombieSwap().

Referenced by HSolve::unzombify(), and HSolve::zombify().

 {
     if ( orig->cinfo() == zClass )
         return;
     unsigned int start = orig->localDataStart();
     unsigned int num = orig->numLocalData();
     if ( num == 0 )
         return;
     // Parameters are Gbar, Ek, Xpower, Ypower, Zpower, useConcentration
     // We also want to haul the original gates over, this is done earlier
     // in the HSolve building process. So just six terms.
     vector< double > chandata( num * 6, 0.0 );
     vector< double >::iterator j = chandata.begin();
 
     for ( unsigned int i = 0; i < num; ++i ) {
         Eref er( orig, i + start );
         const HHChannelBase* hb =
             reinterpret_cast< const HHChannelBase* >( er.data() );
         *j = hb->vGetGbar( er );
         *(j+1) = hb->vGetEk( er);
         *(j+2) = hb->getXpower( er );
         *(j+3) = hb->getYpower( er );
         *(j+4) = hb->getZpower( er );
         *(j+5) = hb->getUseConcentration( er );
         j+= 6;
     }
     orig->zombieSwap( zClass );
     j = chandata.begin();
     for ( unsigned int i = 0; i < num; ++i ) {
         Eref er( orig, i + start );
         HHChannelBase* hb = reinterpret_cast< HHChannelBase* >( er.data() );
         hb->vSetSolver( er, hsolve );
         hb->vSetGbar( er, *j );
         hb->vSetEk( er, *(j+1) );
         hb->vSetXpower( er, *(j+2) );
         hb->vSetYpower( er, *(j+3) );
         hb->vSetZpower( er, *(j+4) );
         // hb->vSetUseConcentration( er, *(j+5) > 0.5 );
         // Disable this assignment because the Solver already reads the
         // value, and it triggers an error msg.
         j+= 6;
     }
 }

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Member Data Documentation

double HHChannelBase::modulation_

protected

Value used to scale channel conductance up or down.

Definition at line 188 of file HHChannelBase.h.

Referenced by vGetModulation(), HHChannel::vGetModulation(), HHChannel::vProcess(), HHChannel::vReinit(), HHChannel::vSetModulation(), and ZombieHHChannel::vSetModulation().

bool HHChannelBase::useConcentration_

protected

Flag for use of conc for input to Z gate calculations.

Definition at line 185 of file HHChannelBase.h.

Referenced by getUseConcentration(), setUseConcentration(), HHChannel::vProcess(), HHChannel::vReinit(), HHChannel::vSetUseConcentration(), and HHChannel::vSetZpower().

double HHChannelBase::Xpower_

protected

Exponent for X gate.

Definition at line 179 of file HHChannelBase.h.

Referenced by getXpower(), HHChannel::vProcess(), HHChannel::vReinit(), HHChannel::vSetXpower(), ZombieHHChannel::vSetXpower(), ZombieHHChannel::vSetYpower(), and ZombieHHChannel::vSetZpower().

double HHChannelBase::Ypower_

protected

Exponent for Y gate.

Definition at line 181 of file HHChannelBase.h.

Referenced by getYpower(), HHChannel::vProcess(), HHChannel::vReinit(), ZombieHHChannel::vSetXpower(), HHChannel::vSetYpower(), ZombieHHChannel::vSetYpower(), and ZombieHHChannel::vSetZpower().

double HHChannelBase::Zpower_

protected

Exponent for Z gate.

Definition at line 183 of file HHChannelBase.h.

Referenced by getZpower(), HHChannel::vProcess(), HHChannel::vReinit(), ZombieHHChannel::vSetXpower(), ZombieHHChannel::vSetYpower(), HHChannel::vSetZpower(), and ZombieHHChannel::vSetZpower().

The documentation for this class was generated from the following files:

moose-core/biophysics/HHChannelBase.h
moose-core/biophysics/HHChannelBase.cpp

Public Member Functions

Static Public Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

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