MMPump Class Reference

#include <MMPump.h>

Collaboration diagram for MMPump:

Public Member Functions
double	getKd (const Eref &e) const
int	getVal (const Eref &e) const
double	getVmax (const Eref &e) const
	MMPump ()
void	process (const Eref &e, ProcPtr p)
void	reinit (const Eref &e, ProcPtr p)
void	setKd (const Eref &e, double value)
void	setVal (const Eref &e, int value)
void	setVmax (const Eref &e, double value)

Static Public Member Functions
static const Cinfo *	initCinfo ()
static SrcFinfo2< double, double > *	PumpOut ()

Private Attributes
double	Kd_
double	Vmax_

Detailed Description

Definition at line 14 of file MMPump.h.

Constructor & Destructor Documentation

MMPump::MMPump

(

)

Definition at line 98 of file MMPump.cpp.

{ ; }

Member Function Documentation

double MMPump::getKd

(

const Eref &

e

)

const

Definition at line 119 of file MMPump.cpp.

References Kd_.

Referenced by initCinfo().

{
  return Kd_;
}

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int MMPump::getVal

(

const Eref &

e

)

const

double MMPump::getVmax

(

const Eref &

e

)

const

Definition at line 104 of file MMPump.cpp.

References Vmax_.

Referenced by initCinfo().

{

  return Vmax_;
}

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const Cinfo * MMPump::initCinfo ( )

static

Definition at line 14 of file MMPump.cpp.

References getKd(), getVmax(), Neutral::initCinfo(), process(), PumpOut(), reinit(), setKd(), and setVmax().

{
  static DestFinfo process( "process",
                "Handles process call",
                new ProcOpFunc< MMPump>(&MMPump::process ) );
  static DestFinfo reinit( "reinit",
               "Reinit happens only in stage 0",
               new ProcOpFunc< MMPump>( &MMPump::reinit ));

  static Finfo* processShared[] = {
    &process, &reinit
  };

  static SharedFinfo proc(
              "proc",
              "Shared message to receive Process message from scheduler",
              processShared, sizeof( processShared ) / sizeof( Finfo* ));


  // Field defs



  static ElementValueFinfo<MMPump, double> Vmax("Vmax",
                          "maximum pump velocity, scaled by mebrane"
                            "surface area. i.e., max ion flux in moles/sec",
                          &MMPump::setVmax,
                          &MMPump::getVmax);

  static ElementValueFinfo<MMPump, double> Kd("Kd",
                         "half-maximal activating concentration in mM",
                         &MMPump::setKd,
                         &MMPump::getKd);

  // DestFinfo
  static Finfo * difMMPumpFinfos[] = {
    // Field definitions


    &Vmax,
    &Kd,
    // SharedFinfo definitions

    &proc,
    PumpOut(),
    // DestFinfo definitions

  };

  static string doc[] = {
    "Name", "MMPump",
    "Author", "Subhasis Ray (ported from GENESIS2)",
    "Description", "Models Michaelis-Menten pump. It is coupled with a DifShell.",
  };
  static ZeroSizeDinfo<int> dinfo;
  static Cinfo MMPumpCinfo(
                  "MMPump",
                  Neutral::initCinfo(),
                  difMMPumpFinfos,
                  sizeof(difMMPumpFinfos)/sizeof(Finfo*),
                  &dinfo,
                  doc,
                  sizeof(doc)/sizeof(string));

  return &MMPumpCinfo;
}

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void MMPump::process	(	const Eref &	e,
		ProcPtr	p
	)

Definition at line 133 of file MMPump.cpp.

References Kd_, PumpOut(), and Vmax_.

Referenced by initCinfo().

{
  PumpOut()->send(e,Vmax_,Kd_);
}

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SrcFinfo2< double, double > * MMPump::PumpOut ( )

static

Definition at line 7 of file MMPump.cpp.

Referenced by initCinfo(), and process().

{
  static SrcFinfo2< double,double > pumpOut( "PumpOut",
                    "Sends out MMPump parameters.");
  return &pumpOut;
}

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void MMPump::reinit	(	const Eref &	e,
		ProcPtr	p
	)

Definition at line 138 of file MMPump.cpp.

Referenced by initCinfo().

{
  return;
}

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void MMPump::setKd	(	const Eref &	e,
		double	value
	)

Definition at line 123 of file MMPump.cpp.

References Kd_, and value.

Referenced by initCinfo().

{
if ( value  < 0.0 ) {
    cerr << "Error: MMPump: Kd cannot be negative!\n";
    return;
  }
  Kd_ = value;
}

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void MMPump::setVal	(	const Eref &	e,
		int	value
	)

void MMPump::setVmax	(	const Eref &	e,
		double	value
	)

Definition at line 109 of file MMPump.cpp.

References value, and Vmax_.

Referenced by initCinfo().

{
if ( value  < 0.0 ) {
    cerr << "Error: MMPump: Vmax cannot be negative!\n";
    return;
  }
  Vmax_ = value;
}

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Member Data Documentation

double MMPump::Kd_

private

Definition at line 39 of file MMPump.h.

Referenced by getKd(), process(), and setKd().

double MMPump::Vmax_

private

Definition at line 38 of file MMPump.h.

Referenced by getVmax(), process(), and setVmax().

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The documentation for this class was generated from the following files:

• moose-core/biophysics/MMPump.h
• moose-core/biophysics/MMPump.cpp