#include <ZombieCaConc.h>

Inheritance diagram for ZombieCaConc:

Collaboration diagram for ZombieCaConc:

Public Member Functions
void	vCurrent (const Eref &e, double I)

void	vCurrentFraction (const Eref &e, double I, double fraction)

void	vDecrease (const Eref &e, double I)

double	vGetB (const Eref &e) const

double	vGetCa (const Eref &e) const

double	vGetCaBasal (const Eref &e) const

double	vGetCeiling (const Eref &e) const

double	vGetFloor (const Eref &e) const

double	vGetTau (const Eref &e) const

void	vIncrease (const Eref &e, double I)

void	vProcess (const Eref &e, ProcPtr info)

void	vReinit (const Eref &e, ProcPtr info)

void	vSetB (const Eref &e, double val)

void	vSetCa (const Eref &e, double val)

void	vSetCaBasal (const Eref &e, double val)

void	vSetCeiling (const Eref &e, double val)

void	vSetFloor (const Eref &e, double val)

void	vSetSolver (const Eref &e, Id hsolve)
	Used to set up the solver. Dummy for regular classes. More...

void	vSetTau (const Eref &e, double val)

	ZombieCaConc ()

Public Member Functions inherited from CaConcBase
	CaConcBase ()

void	current (const Eref &e, double I)

void	currentFraction (const Eref &e, double I, double fraction)

void	decrease (const Eref &e, double I)

double	getB (const Eref &e) const

double	getCa (const Eref &e) const

double	getCaBasal (const Eref &e) const

double	getCeiling (const Eref &e) const

double	getDiameter (const Eref &e) const

double	getFloor (const Eref &e) const

double	getLength (const Eref &e) const

double	getTau (const Eref &e) const

double	getThickness (const Eref &e) const

void	increase (const Eref &e, double I)

void	process (const Eref &, ProcPtr info)

void	reinit (const Eref &, ProcPtr info)

void	setB (const Eref &e, double val)

void	setCa (const Eref &e, double val)

void	setCaBasal (const Eref &e, double val)

void	setCeiling (const Eref &e, double val)

void	setDiameter (const Eref &e, double val)

void	setFloor (const Eref &e, double val)

void	setLength (const Eref &e, double val)

void	setTau (const Eref &e, double val)

void	setThickness (const Eref &e, double val)

void	updateDimensions (const Eref &e)

Static Public Member Functions
static const Cinfo *	initCinfo ()

Static Public Member Functions inherited from CaConcBase
static SrcFinfo1< double > *	concOut ()

static const Cinfo *	initCinfo ()

static void	zombify (Element orig, const Cinfo zClass, Id hsolve)

Private Attributes
double	B_

HSolve *	hsolve_

double	tau_

double	thickness_

Detailed Description

Zombie object that lets HSolve do its calculations, while letting the user interact with this object as if it were the original object.

Definition at line 18 of file ZombieCaConc.h.

Constructor & Destructor Documentation

ZombieCaConc::ZombieCaConc ( )

inline

Definition at line 21 of file ZombieCaConc.h.

         : CaConcBase(),
         hsolve_( NULL ),
         tau_( 0.0 ),
         B_( 0.0 ),
         thickness_( 0.0 )
     {
         ;
     }

Member Function Documentation

const Cinfo * ZombieCaConc::initCinfo ( )

static

Definition at line 21 of file ZombieCaConc.cpp.

References CaConcBase::initCinfo(), and zombieCaConcCinfo.

Referenced by HSolve::zombify().

 {
     static string doc[] =
     {
         "Name", "ZombieCaConc",
         "Author", "Upinder S. Bhalla, 2007, NCBS",
         "Description", "ZombieCaConc: Calcium concentration pool. Takes current from a "
                 "channel and keeps track of calcium buildup and depletion by a "
                 "single exponential process. ",
     };
     static Dinfo< ZombieCaConc > dinfo;
     static Cinfo zombieCaConcCinfo(
         "ZombieCaConc",
         CaConcBase::initCinfo(),
         0,
         0,
         &dinfo,
         doc,
         sizeof( doc )/ sizeof( string )
     );
 
     return &zombieCaConcCinfo;
 }

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void ZombieCaConc::vCurrent	(	const Eref &	e,
		double	I
	)

virtual

Implements CaConcBase.

Definition at line 128 of file ZombieCaConc.cpp.

References hsolve_, HSolve::iCa(), and Eref::id().

 {
     //~ activation_ += I;
     hsolve_->iCa( e.id(), I );
 }

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void ZombieCaConc::vCurrentFraction	(	const Eref &	e,
		double	I,
		double	fraction
	)

virtual

Implements CaConcBase.

Definition at line 134 of file ZombieCaConc.cpp.

 {
     //~ activation_ += I * fraction;
 }

void ZombieCaConc::vDecrease	(	const Eref &	e,
		double	I
	)

virtual

Implements CaConcBase.

Definition at line 144 of file ZombieCaConc.cpp.

 {
     //~ activation_ -= fabs( I );
 }

double ZombieCaConc::vGetB ( const Eref & e ) const

virtual

Implements CaConcBase.

Definition at line 89 of file ZombieCaConc.cpp.

References B_.

 {
     return B_;
 }

double ZombieCaConc::vGetCa ( const Eref & e ) const

virtual

Implements CaConcBase.

Definition at line 57 of file ZombieCaConc.cpp.

References HSolve::getCa(), hsolve_, and Eref::id().

 {
     return hsolve_->getCa( e.id() );
 }

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double ZombieCaConc::vGetCaBasal ( const Eref & e ) const

virtual

Implements CaConcBase.

Definition at line 67 of file ZombieCaConc.cpp.

References HSolve::getCaBasal(), hsolve_, and Eref::id().

 {
     return hsolve_->getCaBasal( e.id() );
 }

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double ZombieCaConc::vGetCeiling ( const Eref & e ) const

virtual

Implements CaConcBase.

Definition at line 99 of file ZombieCaConc.cpp.

References HSolve::getCaCeiling(), hsolve_, and Eref::id().

 {
     return hsolve_->getCaCeiling( e.id() );
 }

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double ZombieCaConc::vGetFloor ( const Eref & e ) const

virtual

Implements CaConcBase.

Definition at line 109 of file ZombieCaConc.cpp.

References HSolve::getCaFloor(), hsolve_, and Eref::id().

 {
     return hsolve_->getCaFloor( e.id() );
 }

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double ZombieCaConc::vGetTau ( const Eref & e ) const

virtual

Implements CaConcBase.

Definition at line 78 of file ZombieCaConc.cpp.

References tau_.

 {
     return tau_;
 }

void ZombieCaConc::vIncrease	(	const Eref &	e,
		double	I
	)

virtual

Implements CaConcBase.

Definition at line 139 of file ZombieCaConc.cpp.

 {
     //~ activation_ += fabs( I );
 }

void ZombieCaConc::vProcess	(	const Eref &	e,
		ProcPtr	info
	)

virtual

Implements CaConcBase.

Definition at line 123 of file ZombieCaConc.cpp.

 {
     ;
 }

void ZombieCaConc::vReinit	(	const Eref &	e,
		ProcPtr	info
	)

virtual

Implements CaConcBase.

Definition at line 118 of file ZombieCaConc.cpp.

 {
     ;
 }

void ZombieCaConc::vSetB	(	const Eref &	e,
		double	val
	)

virtual

Implements CaConcBase.

Definition at line 83 of file ZombieCaConc.cpp.

References B_, hsolve_, Eref::id(), HSolve::setTauB(), and tau_.

 {
     B_ = B;
     hsolve_->setTauB( e.id(), tau_, B_ );
 }

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void ZombieCaConc::vSetCa	(	const Eref &	e,
		double	val
	)

virtual

Implements CaConcBase.

Definition at line 52 of file ZombieCaConc.cpp.

References hsolve_, Eref::id(), and HSolve::setCa().

 {
     hsolve_->setCa( e.id(), Ca );
 }

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void ZombieCaConc::vSetCaBasal	(	const Eref &	e,
		double	val
	)

virtual

Implements CaConcBase.

Definition at line 62 of file ZombieCaConc.cpp.

References hsolve_, Eref::id(), and HSolve::setCa().

 {
     hsolve_->setCa( e.id(), CaBasal );
 }

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void ZombieCaConc::vSetCeiling	(	const Eref &	e,
		double	val
	)

virtual

Implements CaConcBase.

Definition at line 94 of file ZombieCaConc.cpp.

References hsolve_, Eref::id(), and HSolve::setCaCeiling().

 {
     hsolve_->setCaCeiling( e.id(), ceiling );
 }

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void ZombieCaConc::vSetFloor	(	const Eref &	e,
		double	val
	)

virtual

Implements CaConcBase.

Definition at line 104 of file ZombieCaConc.cpp.

References hsolve_, Eref::id(), and HSolve::setCaFloor().

 {
     hsolve_->setCaFloor( e.id(), floor );
 }

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void ZombieCaConc::vSetSolver	(	const Eref &	e,
		Id	hsolve
	)

virtual

Used to set up the solver. Dummy for regular classes.

Reimplemented from CaConcBase.

Definition at line 150 of file ZombieCaConc.cpp.

References Element::cinfo(), Eref::data(), Id::element(), Id::eref(), hsolve_, Cinfo::isA(), and Id::path().

 {
     if ( !hsolve.element()->cinfo()->isA( "HSolve" ) ) {
         cout << "Error: ZombieCaConc::vSetSolver: Object: " <<
                 hsolve.path() << " is not an HSolve. Aborted\n";
         hsolve_ = 0;
         return;
     }
     hsolve_ = reinterpret_cast< HSolve* >( hsolve.eref().data() );
 }

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void ZombieCaConc::vSetTau	(	const Eref &	e,
		double	val
	)

virtual

Implements CaConcBase.

Definition at line 72 of file ZombieCaConc.cpp.

References B_, hsolve_, Eref::id(), HSolve::setTauB(), and tau_.

 {
     tau_ = tau;
     hsolve_->setTauB( e.id(), tau_, B_ );
 }

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Member Data Documentation

double ZombieCaConc::B_

private

Definition at line 66 of file ZombieCaConc.h.

Referenced by vGetB(), vSetB(), and vSetTau().

HSolve* ZombieCaConc::hsolve_

private

Definition at line 63 of file ZombieCaConc.h.

Referenced by vCurrent(), vGetCa(), vGetCaBasal(), vGetCeiling(), vGetFloor(), vSetB(), vSetCa(), vSetCaBasal(), vSetCeiling(), vSetFloor(), vSetSolver(), and vSetTau().

double ZombieCaConc::tau_

private

Definition at line 65 of file ZombieCaConc.h.

Referenced by vGetTau(), vSetB(), and vSetTau().

double ZombieCaConc::thickness_

private

Definition at line 67 of file ZombieCaConc.h.

The documentation for this class was generated from the following files:

moose-core/hsolve/ZombieCaConc.h
moose-core/hsolve/ZombieCaConc.cpp

Public Member Functions

Static Public Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation