#include <SwcSegment.h>

Inheritance diagram for SwcBranch:

Collaboration diagram for SwcBranch:

Public Member Functions
void	printDiagnostics () const

	SwcBranch (int i, const SwcSegment &start, double len, double L, const vector< int > &cable)

Public Member Functions inherited from SwcSegment
void	addChild (unsigned int kid)

double	distance (const SwcSegment &other) const

void	figureOutType ()

double	getElecDistFromSoma () const

double	getGeomDistFromSoma () const

double	getPathDistFromSoma () const

const vector< int > &	kids () const

double	L () const

double	length () const

unsigned int	myIndex () const

bool	OK () const

unsigned int	parent () const

double	radius () const

void	replaceKids (const vector< int > &kids)

void	setBad ()

void	setCumulativeDistance (double len, double L, double pSoma, double eSoma)

void	setGeometricalDistanceFromSoma (const SwcSegment &soma)

void	setParent (unsigned int pa)

	SwcSegment ()

	SwcSegment (const string &line)

	SwcSegment (int i, short type, double x, double y, double z, double r, int parent)

unsigned short	type () const

const Vec &	vec () const

Public Attributes
double	electroLength

double	geomLength
	Radius at end. More...

double	pathLength
	Geometrical length of entire branch, summed along all segments. More...

double	r0

double	r1
	Radius at beginning. More...

vector< int >	segs_

Additional Inherited Members
Static Public Attributes inherited from SwcSegment
static const short	APICAL = 4

static const short	APICAL_END = 13

static const short	APICAL_FORK = 12

static const short	AXON = 2

static const short	AXON_END = 11

static const short	AXON_FORK = 10

static const short	BadSegment = 8

static const short	CUSTOM = 7

static const short	DEND = 3

static const short	END = 6

static const short	FORK = 5

static const short	SOMA = 1

static const string	typeName []

static const short	UNDEF = 0

Protected Attributes inherited from SwcSegment
double	electrotonicDistanceFromSoma_
	electrotonic dist from soma, summed along dend. More...

double	geometricalDistanceFromSoma_
	geometrical distance from soma. More...

vector< int >	kids_

double	L_
	Length of segment. More...

double	length_
	Radius of segment. More...

unsigned int	myIndex_

unsigned int	parent_
	Number of length constants in segment. More...

double	pathDistanceFromSoma_
	Index of parent. Is ~0 for soma. More...

double	radius_
	coordinates of end of segment More...

short	type_
	Index of self. More...

Vec	v_

Detailed Description

Definition at line 172 of file SwcSegment.h.

Constructor & Destructor Documentation

SwcBranch::SwcBranch	(	int	i,
		const SwcSegment &	start,
		double	len,
		double	L,
		const vector< int > &	cable
	)

Definition at line 112 of file SwcSegment.cpp.

References SwcSegment::kids_, SwcSegment::myIndex_, SwcSegment::parent_, and segs_.

                 : SwcSegment( start ),
                 r0( start.radius() ),
                 r1( start.radius() ),
                 geomLength( len ),
                 electroLength( L )
 {
     myIndex_ = i;
     parent_ = 0;
     kids_.resize( 0 );
     segs_.resize( cable.size() );
     // Put the contents of cable into segs, in reverse order.
     vector< int >::const_reverse_iterator j = cable.rbegin();
     vector< int >::iterator k = segs_.begin();
     for ( k = segs_.begin(); k != segs_.end(); ++k )
         *k = *j++;
 }

Member Function Documentation

void SwcBranch::printDiagnostics ( ) const

Definition at line 131 of file SwcSegment.cpp.

References electroLength, geomLength, SwcSegment::myIndex(), SwcSegment::parent(), and segs_.

 {
     cout << myIndex() << ":  " << segs_[0] << " -> " << segs_.back() <<
             " = " << segs_.size() <<
             " : pa = " << parent() << " ,   length=( " <<
             geomLength << ", " << electroLength << " )\n";
 }

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Member Data Documentation

double SwcBranch::electroLength

Electrotonic length summed along all branch segments. This does not include the assumed constant RA and RA terms, those are treated as 1.0. Suitable post-facto scaling needed.

Definition at line 195 of file SwcSegment.h.

Referenced by printDiagnostics().

double SwcBranch::geomLength

Radius at end.

Geometrical length of dendrite from soma

Definition at line 184 of file SwcSegment.h.

Referenced by printDiagnostics().

double SwcBranch::pathLength

Geometrical length of entire branch, summed along all segments.

Definition at line 187 of file SwcSegment.h.

double SwcBranch::r0

Definition at line 180 of file SwcSegment.h.

double SwcBranch::r1

Radius at beginning.

Definition at line 181 of file SwcSegment.h.

vector< int > SwcBranch::segs_

segs: ist of segments, in order away from soma. The starting entry is the one after the fork point. The last entry is either a fork or an end point.

Definition at line 202 of file SwcSegment.h.

Referenced by ReadSwc::build(), printDiagnostics(), and SwcBranch().

The documentation for this class was generated from the following files:

moose-core/biophysics/SwcSegment.h
moose-core/biophysics/SwcSegment.cpp

Public Member Functions

Public Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation